LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2880g00009	ATGGCGGCTCAGCTTCCAGAACATTTCAAATGTCCGATTTCGCTGGAAATAATGTCCGACCCGGTCATCCTCTCTTCGGGTCACACCTTCGACCGTTCTTCAATTCAACGCTGGCTCGACGCCGGTCACCGCACCTGTCCAATTACCAAACTGCCCCTCCCCGATCACGATCCCCTCATCCCCAACCACGCCCTCCGAAGCTTGATTTCCAACTATGCCCCCATTTCCCCTCTCCACCACCCTCCGCCGCCGCATCCCCAAACCCTAATCTCCACCCTCACCTCTCCCTCCTCCTCCGTCCACTCCAAAATCGAGTCGCTACGCCAACTCGCCCGCCTCTCCAAGCGCGACTCTTCCTTCCGCCGTCGTCTCACCGAGTCCGGCGTCGTGCCGGCGGTACTCTTCTGCATAGACTCCGGCGACGACTCCCTCCGGGAGAAAGCCCTCTCACTCCTGCTGAACCTCAGCCTTGACGACGACAACAAGGTGGGCCTGGTGGCGGAGGGCGTGGTCGGCCGCGTCGTCGCCGTTCTCATGGCCGGCGCCTCCGATTGCCGCGCCGTGGCGGCTACTATGCTGACGAGCTTGGCCGTGGTGGAGGTGAACAAAGCGACGATCGGTGCGTACCCGCATGCGATTGAAGCTCTGGTATCCCTCGTGCGGGACGGTAAAGGGAGAGAGAAGAAAGAAGCGGCGACGGCGCTTTACGCTATATGTTCTTTCCCTGATAATCGGAGAAGAGCGGTGGAATGTGGGGCCGTCCCTGTTTTGCTTCGAAGTGCTGATTCTGGGCTTGAAAGGAGTGTTGAAGTTGTTGGGGTTCTGGCTAAGTGTAAGGAAGGGAGAGAGAAAATGGAAAGGTTTCATGGGTGTGTGAATATTCTGACTCGGGTTTTGAGGAATGGAAGCTCCAGGGGGGTTCAGTATGCTCTGGCGGCTCTCAATTCCCTCTGTTGTAACAGTGAAGGAAATGTTCTGGAGGCCATGGAAGCAGGGGTTTTGGAAATTTGTCTCGGGTTGCTGGAGGATGATAATGAGAAGGTGAGGAGGAACTCCTCATGTTTGATTCAGGTTCTGCGTGGCAACCATCGGATGAGTTCATAG	1104	0.5679	MAAQLPEHFKCPISLEIMSDPVILSSGHTFDRSSIQRWLDAGHRTCPITKLPLPDHDPLIPNHALRSLISNYAPISPLHHPPPPHPQTLISTLTSPSSSVHSKIESLRQLARLSKRDSSFRRRLTESGVVPAVLFCIDSGDDSLREKALSLLLNLSLDDDNKVGLVAEGVVGRVVAVLMAGASDCRAVAATMLTSLAVVEVNKATIGAYPHAIEALVSLVRDGKGREKKEAATALYAICSFPDNRRRAVECGAVPVLLRSADSGLERSVEVVGVLAKCKEGREKMERFHGCVNILTRVLRNGSSRGVQYALAALNSLCCNSEGNVLEAMEAGVLEICLGLLEDDNEKVRRNSSCLIQVLRGNHRMSS	367

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2880g00009	367	Pfam	U-box domain	6	72	IPR003613	GO:0004842\|GO:0016567
	Gabi2880g00009	367	SUPERFAMILY	ARM repeat	87	359	IPR016024	-
	Gabi2880g00009	367	PANTHER	U BOX DOMAIN-CONTAINING	5	340	-	-
	Gabi2880g00009	367	SMART	Ubox_2	8	72	IPR003613	GO:0004842\|GO:0016567
	Gabi2880g00009	367	SMART	arm_5	158	198	IPR000225	GO:0005515
	Gabi2880g00009	367	SMART	arm_5	117	157	IPR000225	GO:0005515
	Gabi2880g00009	367	SMART	arm_5	202	240	IPR000225	GO:0005515
	Gabi2880g00009	367	SMART	arm_5	320	361	IPR000225	GO:0005515
	Gabi2880g00009	367	SMART	arm_5	278	319	IPR000225	GO:0005515
	Gabi2880g00009	367	FunFam	RING-type E3 ubiquitin transferase	4	76	-	-
	Gabi2880g00009	367	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	2	69	IPR013083	-
	Gabi2880g00009	367	ProSiteProfiles	U-box domain profile.	4	79	IPR003613	GO:0004842\|GO:0016567
	Gabi2880g00009	367	CDD	RING-Ubox_PUB	6	55	IPR045210	-
	Gabi2880g00009	367	FunFam	RING-type E3 ubiquitin transferase	85	361	-	-
	Gabi2880g00009	367	SUPERFAMILY	RING/U-box	3	73	-	-
	Gabi2880g00009	367	Gene3D	-	70	366	IPR011989	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2880g00009	Gabi-Chr2880	64056	66112	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2880g00009	1	361	U-box Gene Family	AT4G21350	61.789	2.00e-153	435

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2880g00009	-		-	pcin:129286672	540.806