Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00005 ATGGCTGAGGAGTTTCAAGCTGGGATTTGTGGTGAAAGCTGGTGGAATATTAATTCAACGAGAAGTGTATTCCCTCTTATGAGCTCATCATCAACCTGTTCTGTGGCAGCTAATGATGCAGGGAACTATAGCACTTGGCAAACTGATCATTTCATGGATTTGAAGGCAACAAGGTCTTGTGCTGAGGAGACTAATAATTTTGTTTCTGATGGTTCTCTGGGTTTTCTTGATGCTCAGAAGCCACAGCAGAGTAGTGGAACTGGCAGCATCTTCATTGATTCCACCTTACAAATGATGGGTTTTGGCCTGTCATCTTCAACTTCATCGAATTGGAATCACTCTCTGCTTCATTGTACTGGAAGGCCAGAGAGCAATTTTCATTCTGTGATTCAAGAAGAAACAGGCATAGATACTACAAATAATTCTGGCGGAATCCAAGTTTCCACCGTTGATGCCTTCAAGTCAATGAACCAAGAATTTTCCTTAGATCAGCAGCAGAATCTGAATTCTGTAACCAGCACAGTTTTATCAGGTGATTTCCAAATTGGTTCAGCTTCCTATGGTTACCCTTCAACGTTGATAGAAAGCTTATATGACCCTGATCCTCAACCACATGATTCACTTTTCACCAACCCATCTATGTCCTATTCATCAACTGCAAACTATGGGACATCTTCCAATGAACTTTCACAAACATGGCCTAAAGTCCCTTCCCTTCTGAAGCCATCAATGCCAAAGCAGCAGCTTAGTGGATTGCACTTTTCCAACAATACTCCTTTCTGGAATGCTTCAGCCGAGGCACTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAACCACAATATCACACGCAAAATCTTCAAGAGAAACCCAATTCCCCAAGTACTCTCTTAAACAAGCTTAAGAGAGAAGAATCTCCAGACACGGCATCAGCGGCTAAGAAAAGTTCTTCTGAGCCTGCATTCAAAAGGCCAAGAATTGAGACTCCATCCCCATTACCAACTTTTAAGGTTAGGAAAGAGAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGCAAGACGGACACAGCATCCGTTCTTCATGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTCAGTGTTTTGAATACTCCATATATGAAAAATGGAGCTCCCATTCAACACCAGCAGGGTTATGATAATCTGAATGACTCAGAAGGACCAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTACCGATTTCAAGCACATTCCCGGTGGCTAATGAGACCACTGTTGATTTCTGGACCCCTACGTTTGGAGGCACACTCATCGGAAGTTAG 1353 0.4309 MAEEFQAGICGESWWNINSTRSVFPLMSSSSTCSVAANDAGNYSTWQTDHFMDLKATRSCAEETNNFVSDGSLGFLDAQKPQQSSGTGSIFIDSTLQMMGFGLSSSTSSNWNHSLLHCTGRPESNFHSVIQEETGIDTTNNSGGIQVSTVDAFKSMNQEFSLDQQQNLNSVTSTVLSGDFQIGSASYGYPSTLIESLYDPDPQPHDSLFTNPSMSYSSTANYGTSSNELSQTWPKVPSLLKPSMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVFASSQPQYHTQNLQEKPNSPSTLLNKLKREESPDTASAAKKSSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVSVLNTPYMKNGAPIQHQQGYDNLNDSEGPKQDLRSRGLCLVPISSTFPVANETTVDFWTPTFGGTLIGS 450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00005 450 Gene3D - 338 398 IPR036638 GO:0046983
Gabi2880g00005 450 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Gabi2880g00005 450 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 395 IPR036638 GO:0046983
Gabi2880g00005 450 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 132 429 - -
Gabi2880g00005 450 MobiDBLite consensus disorder prediction 303 334 - -
Gabi2880g00005 450 FunFam Transcription factor bHLH123 family 338 400 - -
Gabi2880g00005 450 CDD bHLH_AtbHLH_like 334 384 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00005 Gabi-Chr2880 30899 33661 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00005 1 445 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 41.202 1.66e-75 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00005 - - gmx:100805087 632.484