Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2880g00004 ATGGCTGAGGAGTTTCAAGCTGGGATTTGTGGTGAAAGCTGGTGGAATATTAATTCAACGAGAAGTGTATTCCCTCTTATGAGCTCATCATCAACCTGTTCTGTGGCAGCTAATGATGCAGGGAACTATAGCACTTGGCAAACTGATCATTTCATGGATTTGAAGGCAACAAGGTCTTGTGCTGAGGAGACTAATAATTTTGTTTCTGATGGTTCTCTGGGTTTTCTTGATGCTCAGAAGCCACAGCAGAGTAGTGGAACTGGCAGCATCTTCATTGATTCCACCTTACAAATGATGGGTTTTGGCCTGTCATCTTCAACTTCATCGAATTGGAATCACTCTCTGCTTCATTGTACTGGAAGGCCAGAGAGCAATTTTCATTCTGTGATTCAAGAAGAAACAGGCATAGATACTACAAATAATTCTGGCGGAATCCAAGTTTCCACCGTTGATGCCTTCAAGTCAATGAACCAAGAATTTTCCTTAGATCAGCAGCAGAATCTGAATTCTGTAACCAGCACAGTTTTATCAGGTGATTTCCAAATTGGTTCAGCTTCCTATGGTTACCCTTCAACGTTGATAGAAAGCTTATATGACCCTGATCCTCAACCACATGATTCACTTTTCACCAACCCATCTATGTCCTATTCATCAACTGCAAACTATGGGACATCTTCCAATGAACTTTCACAAACATGGCCTAAAGTCCCTTCCCTTCTGAAGCCATCAATGCCAAAGCAGCAGCTTAGTGGATTGCACTTTTCCAACAATACTCCTTTCTGGAATGCTTCAGCCGAGGCACTTAATGACATAAGAGCAGGTGTTTTTGCTTCATCACAACCACAATATCACACGCAAAATCTTCAAGAGAAACCCAATTCCCCAAGTACTCTCTTAAACAAGCTTAAGAGAGAAGAATCTCCAGACACGGCATCAGCGGCTAAGAAAAGTTCTTCTGAGCCTGCATTCAAAAGGCCAAGAATTGAGACTCCATCCCCATTACCAACTTTTAAGGTTAGGAAAGAGAAGCTGGGGGACCGCATCACTGCTCTTCAGCAATTGGTTTCACCTTTCGGCAAGACGGACACAGCATCCGTTCTTCATGAAGCCATCGAGTACATCAAGTTCCTTCATGATCAAGTTTTGAATACTCCATATATGAAAAATGGAGCTCCCATTCAACACCAGCAGGGTTATGATAATCTGAATGACTCAGAAGGACCAAAACAAGATTTGAGAAGCCGAGGGCTGTGTTTGGTACCGATTTCAAGCACATTCCCGGTGGCTAATGAGACCACTGTTGATTTCTGGACCCCTACGTTTGGAGGCACACTCATCGGAAGTTAG 1347 0.4306 MAEEFQAGICGESWWNINSTRSVFPLMSSSSTCSVAANDAGNYSTWQTDHFMDLKATRSCAEETNNFVSDGSLGFLDAQKPQQSSGTGSIFIDSTLQMMGFGLSSSTSSNWNHSLLHCTGRPESNFHSVIQEETGIDTTNNSGGIQVSTVDAFKSMNQEFSLDQQQNLNSVTSTVLSGDFQIGSASYGYPSTLIESLYDPDPQPHDSLFTNPSMSYSSTANYGTSSNELSQTWPKVPSLLKPSMPKQQLSGLHFSNNTPFWNASAEALNDIRAGVFASSQPQYHTQNLQEKPNSPSTLLNKLKREESPDTASAAKKSSSEPAFKRPRIETPSPLPTFKVRKEKLGDRITALQQLVSPFGKTDTASVLHEAIEYIKFLHDQVLNTPYMKNGAPIQHQQGYDNLNDSEGPKQDLRSRGLCLVPISSTFPVANETTVDFWTPTFGGTLIGS 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2880g00004 448 Gene3D - 338 392 IPR036638 GO:0046983
Gabi2880g00004 448 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 328 377 IPR011598 GO:0046983
Gabi2880g00004 448 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 338 382 IPR036638 GO:0046983
Gabi2880g00004 448 MobiDBLite consensus disorder prediction 303 334 - -
Gabi2880g00004 448 FunFam Transcription factor bHLH123 family 338 398 - -
Gabi2880g00004 448 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 134 427 - -
Gabi2880g00004 448 CDD bHLH_AtbHLH_like 334 381 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2880g00004 Gabi-Chr2880 30898 33661 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2880g00004 1 443 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G61660 40.987 9.45e-73 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2880g00004 - - gmx:100805087 624.394