Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi287g00008 ATGGGGTTAGGTGCTGAGAATGGTAAGGTGGTGGAGTCAAAATGGAGGAGGAAGAAGAAGAAGAAGAAGATAGAGGATGAGGAAAAGAGTGGGTGTTGGGTTAGGCTGAGATTCATGGGTAGCTGCATTTCCTCAAGATCCAAGGTTGATAGCTCAGTCAGCGCTGAAAGTAAATCAACTAATGATACAAGTAGAGACCAACCAACAGCTCCAGCGGTCTCTTCTACAACCACTAGTAATGCAGAAAGCAATTCATCCACTTCAAAACTTGAAGAGGAGCTTAAAATTGCTTCCAGACTGCGAAAATTCTCTTTCAATGACCTTAAGTTGGCAACAAGAAATTTTCGGCCTGAGAGTTTCCTTGGGGAAGGTGGGTTTGGTTGTGTTTTCAAGGGGTGGATTGAAGAAAATGGAACTGCTCCCGTGAAACCTGGCACAGGGCTTACCGTTGCTGTAAAAACCCTTAACCATGATGGGCTCCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTTCTTGGTGATCTAGTTCATCCAAACCTTGTTAAACTTGTAGGTTACTGCATTGAAGATAATCAAAGGTTGCTGGTGTATGAGTTCATGGCTCGGGGAAGCCTGGAAAACCACTTATTTAGGAGATCCCTGCCTCTTCCATGGTCCATTAGGATGAAAATTGCGCTAGGAGCTGCTAAGGGCCTTACTTTTCTTCATGAAGAAGCTGAACGACCAGTAATATATAGGGATTTTAAAACTTCAAATATACTATTAGATGCTGACTACAATGCAAAACTCTCGGACTTTGGTCTTGCCAAAGATGGTCCAGAAGGTGATAAAACCCATGTGTCTACACGAGTGATGGGAACCTACGGTTATGCAGCACCAGAATATGTCATGACAGGTCATCTTACATCAAGAAGCGACGTGTACAGTTTTGGAGTGGTACTACTTGAGATGTTGACCGGCAGAAGATCTATGGATAAACACAGACCCAATGGTGAACATAACCTTGTGGAATGGGCTCGGCCTTATCTCGGGGAGAGGAGAAGGTTCTATAGGTTGATAGACCCTCGCCTGGAAGGTCACTTTTCCATAAAAGGAGCTCAGAAAGCAGCACAATTGGCTGCTCACTGCCTTAATAGAGATCCAAAAGCCAGACCCCTAATGAGTGAAGTTGTAGAGGCTTTAAAGCCTCTCCCAAACCTTAAGGACATGGCAAGTTCTTTATATTATTTCCAGACAATGCAAGCTGACCGCTTTAGAGCAAGCCCAAATACTAGAAATGGACGCCAGCAAAGGAGCCTTTCAATACCAAATGGTACTCATGCATCTCCATATCACCATCAGTATCCCCAACAATCACCAAAACCCAAAGCCAAAGCATAG 1383 0.4403 MGLGAENGKVVESKWRRKKKKKKIEDEEKSGCWVRLRFMGSCISSRSKVDSSVSAESKSTNDTSRDQPTAPAVSSTTTSNAESNSSTSKLEEELKIASRLRKFSFNDLKLATRNFRPESFLGEGGFGCVFKGWIEENGTAPVKPGTGLTVAVKTLNHDGLQGHKEWLAEVNFLGDLVHPNLVKLVGYCIEDNQRLLVYEFMARGSLENHLFRRSLPLPWSIRMKIALGAAKGLTFLHEEAERPVIYRDFKTSNILLDADYNAKLSDFGLAKDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSRSDVYSFGVVLLEMLTGRRSMDKHRPNGEHNLVEWARPYLGERRRFYRLIDPRLEGHFSIKGAQKAAQLAAHCLNRDPKARPLMSEVVEALKPLPNLKDMASSLYYFQTMQADRFRASPNTRNGRQQRSLSIPNGTHASPYHHQYPQQSPKPKAKA 460
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi287g00008 460 MobiDBLite consensus disorder prediction 44 87 - -
Gabi287g00008 460 MobiDBLite consensus disorder prediction 421 460 - -
Gabi287g00008 460 MobiDBLite consensus disorder prediction 421 450 - -
Gabi287g00008 460 Gene3D Transferase(Phosphotransferase) domain 1 201 414 - -
Gabi287g00008 460 Gene3D Phosphorylase Kinase; domain 1 74 200 - -
Gabi287g00008 460 MobiDBLite consensus disorder prediction 1 28 - -
Gabi287g00008 460 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Gabi287g00008 460 ProSitePatterns Protein kinases ATP-binding region signature. 121 153 IPR017441 GO:0005524
Gabi287g00008 460 MobiDBLite consensus disorder prediction 44 88 - -
Gabi287g00008 460 Pfam Protein tyrosine and serine/threonine kinase 120 395 IPR001245 GO:0004672|GO:0006468
Gabi287g00008 460 CDD STKc_IRAK 121 398 - -
Gabi287g00008 460 FunFam Probable serine/threonine-protein kinase PBL8 201 416 - -
Gabi287g00008 460 ProSiteProfiles Protein kinase domain profile. 115 401 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi287g00008 460 PANTHER OS01G0588500 PROTEIN-RELATED 75 398 - -
Gabi287g00008 460 FunFam Serine/threonine-protein kinase BIK1 82 200 - -
Gabi287g00008 460 SUPERFAMILY Protein kinase-like (PK-like) 101 421 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi287g00008 Gabi-Chr287 115446 120034 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi287g00008 62 411 Glycoside Hydrolase AT3G07070 51.412 7.99e-118 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi287g00008 PK_Tyr_Ser-Thr 6.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi287g00008 - - gmx:100787151 803.512