Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi287g00005 ATGGAGTTGGAAACCAAGTTGCGTGCGATACAGAAATCCTTCGACGACCGTTACTCACGCTACGCGCGCGAGTCGCTCGACGAATTGCCTGATAATTTCACCATCACCGACCCTTCCATACCGGGCCACCCCATCGTGTTCGCCAGCCTCGGGTTCCTCAAGATGATGGGTTATTCCAGAGATGAAGTTGTTGGCAAGAGTGGGGCCATGTTTCAGGGTCCAGGGACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTAGGGAAGAGAGAATGGCTCAGGTCAACTTGTTGAACTATCGCAAGGATGGCACACCCTTTTGGATGTTGTTTCACGTTTCCCCTGTTTTCAGTGCCCATGGCGGCGCCGTCGTTCACTTCGTTGCGGTTCAGGTCCCACTCCACAGAAAACCCAGGGTTCGGAGCCAGGACGGATCCAGGGTGCAGGATTTTGGGTTTGGTTGTTGTAGGAAAGAAGTTTGCTCTGATTCTTTGCTCGAACTTGGTCGTGTTTCTTCCTTGGATCAAGTGTTGGAACATGATGTCAGAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGTGCTGTGACTGCCATGGACAACATTTTTTCTGTACTAACCCACTATAGCGAGTCGACGGGCAGATTGGTGTGTAGAAAGAGATGCAGCATGCCTGACGTGGGTGTTTTTAGCTCATCCTTCCTTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTACCGGACATACCTATTGTTTATGCCAGTGACGCCTTCTTGAAATTGACAGGGTATCCAAGAGATGAAGTGTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCAACTTTACATCAGGTTAACACTTTCCTTCACTTTTGTCTGTGCTGCCAAAGCTGTGAACGTTATTTATTGGATGTGCTGAATCAATTTACTTCAACACTAACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATTTCACCTGTTCGTGATGCTTCTGGCAAGGTAG 1065 0.4723 MELETKLRAIQKSFDDRYSRYARESLDELPDNFTITDPSIPGHPIVFASLGFLKMMGYSRDEVVGKSGAMFQGPGTCRRSVMEIREAVREERMAQVNLLNYRKDGTPFWMLFHVSPVFSAHGGAVVHFVAVQVPLHRKPRVRSQDGSRVQDFGFGCCRKEVCSDSLLELGRVSSLDQVLEHDVRELESEEPCEASDVEKRSAVTAMDNIFSVLTHYSESTGRLVCRKRCSMPDVGVFSSSFLISLGRIKQSFVLTNPHLPDIPIVYASDAFLKLTGYPRDEVLGRNCRFLGGTDTDTSTLHQVNTFLHFCLCCQSCERYLLDVLNQFTSTLTGRIKAHFGIFFTFHLFVMLLAR 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi287g00005 354 SMART pac_2 95 138 IPR001610 -
Gabi287g00005 354 PANTHER PROTEIN TWIN LOV 1 6 304 - -
Gabi287g00005 354 FunFam Protein TWIN LOV 1 isoform D 32 215 - -
Gabi287g00005 354 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 130 IPR035965 -
Gabi287g00005 354 CDD PAS 29 123 IPR000014 -
Gabi287g00005 354 Gene3D PAS domain 251 325 - -
Gabi287g00005 354 NCBIfam PAS domain S-box protein 45 126 IPR000014 -
Gabi287g00005 354 Gene3D PAS domain 15 149 - -
Gabi287g00005 354 ProSiteProfiles PAS repeat profile. 264 286 IPR000014 -
Gabi287g00005 354 SUPERFAMILY PYP-like sensor domain (PAS domain) 255 305 IPR035965 -
Gabi287g00005 354 CDD PAS 264 290 IPR000014 -
Gabi287g00005 354 Pfam PAS domain 251 295 IPR000014 -
Gabi287g00005 354 Pfam PAS domain 41 132 IPR000014 -
Gabi287g00005 354 ProSiteProfiles PAS repeat profile. 18 67 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi287g00005 Gabi-Chr287 83998 87811 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi287g00005 17 303 AGC Kinase Gene Family AT5G58140 30.183 1.11e-39 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi287g00005 - - gmx:100785562 461.84