Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi287g00004 ATGGAGTTGGAAACCAAGTTGCGTGCGATACAGAAATCCTTCGACGACCGTTACTCACGCTACGCGCGCGAGTCGCTCGACGAATTGCCTGATAATTTCACCATCACCGACCCTTCCATACCGGGCCACCCCATCGTGTTCGCCAGCCTCGGGTTCCTCAAGATGATGGGTTATTCCAGAGATGAAGTTGTTGGCAAGAGTGGGGCCATGTTTCAGGGTCCAGGGACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTAGGGAAGAGAGAATGGCTCAGGTCAACTTGTTGAACTATCGCAAGGATGGCACACCCTTTTGGATGTTGTTTCACGTTTCCCCTGTTTTCAGTGCCCATGGCGGCGCCGTCGTTCACTTCGTTGCGGTTCAGGTCCCACTCCACAGAAAACCCAGGGTTCGGAGCCAGGACGGATCCAGGGTGCAGGATTTTGGGTTTGGTTGTTGTAGGAAAGAAGTTTGCTCTGATTCTTTGCTCGAACTTGGTCGTGTTTCTTCCTTGGATCAAGTGTTGGAACATGATGTCAGAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGTGCTGTGACTGCCATGGACAACATTTTTTCTGTACTAACCCACTATAGCGAGTCGACGGGCAGATTGGTGTGTAGAAAGAGATGCAGCATGCCTGACGTGGGTGTTTTTAGCTCATCCTTCCTTATTTCTCTTGGTAGAATCAAACAAAGCTTTGTATTAACTAATCCACATTTACCGGACATACCTATTGTTTATGCCAGTGACGCCTTCTTGAAATTGACAGGGTATCCAAGAGATGAAGTGTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCAACTTTACATCAGATAGGGGAAAGCATTAAAACTGAACAACCGTGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATTTCACCTGTTCGTGATGCTTCTGGCAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGATGACTATAAAAACGAGGATAGACAGTGTTGGAGACCTGAGATGAGGCATCTTAGCGTGGTTGGTGTGGTCAAGGCCGCAGTGAGGAGTTCATCATTAACTGCCGGAACTTCGAAGTCAAAGTCATAG 1185 0.4726 MELETKLRAIQKSFDDRYSRYARESLDELPDNFTITDPSIPGHPIVFASLGFLKMMGYSRDEVVGKSGAMFQGPGTCRRSVMEIREAVREERMAQVNLLNYRKDGTPFWMLFHVSPVFSAHGGAVVHFVAVQVPLHRKPRVRSQDGSRVQDFGFGCCRKEVCSDSLLELGRVSSLDQVLEHDVRELESEEPCEASDVEKRSAVTAMDNIFSVLTHYSESTGRLVCRKRCSMPDVGVFSSSFLISLGRIKQSFVLTNPHLPDIPIVYASDAFLKLTGYPRDEVLGRNCRFLGGTDTDTSTLHQIGESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDDYKNEDRQCWRPEMRHLSVVGVVKAAVRSSSLTAGTSKSKS 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi287g00004 394 SUPERFAMILY PYP-like sensor domain (PAS domain) 255 350 IPR035965 -
Gabi287g00004 394 CDD PAS 29 123 IPR000014 -
Gabi287g00004 394 Gene3D PAS domain 15 149 - -
Gabi287g00004 394 Gene3D PAS domain 251 391 - -
Gabi287g00004 394 PANTHER PROTEIN TWIN LOV 1 6 382 - -
Gabi287g00004 394 FunFam Protein TWIN LOV 1 isoform D 32 215 - -
Gabi287g00004 394 ProSiteProfiles PAS repeat profile. 264 286 IPR000014 -
Gabi287g00004 394 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 130 IPR035965 -
Gabi287g00004 394 CDD PAS 264 349 IPR000014 -
Gabi287g00004 394 SMART pac_2 95 138 IPR001610 -
Gabi287g00004 394 SMART pac_2 314 356 IPR001610 -
Gabi287g00004 394 FunFam protein TWIN LOV 1 251 387 - -
Gabi287g00004 394 SMART pas_2 239 312 IPR000014 -
Gabi287g00004 394 SMART pas_2 20 89 IPR000014 -
Gabi287g00004 394 Pfam PAS domain 41 132 IPR000014 -
Gabi287g00004 394 Pfam PAS domain 251 350 IPR000014 -
Gabi287g00004 394 NCBIfam PAS domain S-box protein 45 126 IPR000014 -
Gabi287g00004 394 NCBIfam PAS domain S-box protein 264 349 IPR000014 -
Gabi287g00004 394 ProSiteProfiles PAS repeat profile. 18 67 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi287g00004 Gabi-Chr287 83613 87903 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi287g00004 244 380 AGC Kinase Gene Family AT5G58140 43.796 6.18e-35 135