Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi287g00003 ATGGAGTTGGAAACCAAGTTGCGTGCGATACAGAAATCCTTCGACGACCGTTACTCACGCTACGCGCGCGAGTCGCTCGACGAATTGCCTGATAATTTCACCATCACCGACCCTTCCATACCGGGCCACCCCATCGTGTTCGCCAGCCTCGGGTTCCTCAAGATGATGGGTTATTCCAGAGATGAAGTTGTTGGCAAGAGTGGGGCCATGTTTCAGGGTCCAGGGACTTGTAGAAGGTCGGTGATGGAGATTCGAGAGGCCGTTAGGGAAGAGAGAATGGCTCAGGTCAACTTGTTGAACTATCGCAAGGATGGCACACCCTTTTGGATGTTGTTTCACGTTTCCCCTGTTTTCAGTGCCCATGGCGGCGCCGTCGTTCACTTCGTTGCGGTTCAGGTCCCACTCCACAGAAAACCCAGGGTTCGGAGCCAGGACGGATCCAGGGTGCAGGATTTTGGGTTTGGTTGTTGTAGGAAAGAAGTTTGCTCTGATTCTTTGCTCGAACTTGGTCGTGTTTCTTCCTTGGATCAAGTGTTGGAACATGATGTCAGAGAATTGGAGAGTGAAGAGCCGTGTGAGGCAAGTGATGTTGAGAAGAGAAGTGCTGTGACTGCCATGGACAACATTTTTTCTGTACTAACCCACTATAGCGAGTCGACGGGCAGATTGGTGTGTAGAAAGAGATGCAGCATGCCTGACTTTCCTTGCAGAACTAATCCACATTTACCGGACATACCTATTGTTTATGCCAGTGACGCCTTCTTGAAATTGACAGGGTATCCAAGAGATGAAGTGTTGGGCCGCAACTGTAGATTTTTAGGTGGAACAGATACTGATACCTCAACTTTACATCAGATAGGGGAAAGCATTAAAACTGAACAACCGTGCACAGTACGTATTTTGAATTACAGGAAGGATAAAAGCTCATTTTGGAATCTTCTTCACATTTCACCTGTTCGTGATGCTTCTGGCAAGGTAGCATACTTTGTGGGAGTTCAAATAGAAGATGACTATAAAAACGAGGATAGACAGTGTTGGAGACCTGAGATGAGGCATCTTAGCGTGGTTGGTGTGGTCAAGGCCGCAGTGAGGAGTTCATCATTAACTGCCGGAACTTCGAAGTCAAAGTCATAG 1134 0.4788 MELETKLRAIQKSFDDRYSRYARESLDELPDNFTITDPSIPGHPIVFASLGFLKMMGYSRDEVVGKSGAMFQGPGTCRRSVMEIREAVREERMAQVNLLNYRKDGTPFWMLFHVSPVFSAHGGAVVHFVAVQVPLHRKPRVRSQDGSRVQDFGFGCCRKEVCSDSLLELGRVSSLDQVLEHDVRELESEEPCEASDVEKRSAVTAMDNIFSVLTHYSESTGRLVCRKRCSMPDFPCRTNPHLPDIPIVYASDAFLKLTGYPRDEVLGRNCRFLGGTDTDTSTLHQIGESIKTEQPCTVRILNYRKDKSSFWNLLHISPVRDASGKVAYFVGVQIEDDYKNEDRQCWRPEMRHLSVVGVVKAAVRSSSLTAGTSKSKS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi287g00003 377 ProSiteProfiles PAS repeat profile. 247 269 IPR000014 -
Gabi287g00003 377 FunFam Protein TWIN LOV 1 isoform D 32 215 - -
Gabi287g00003 377 NCBIfam PAS domain S-box protein 247 332 IPR000014 -
Gabi287g00003 377 NCBIfam PAS domain S-box protein 45 126 IPR000014 -
Gabi287g00003 377 CDD PAS 29 123 IPR000014 -
Gabi287g00003 377 Gene3D PAS domain 15 149 - -
Gabi287g00003 377 PANTHER PROTEIN TWIN LOV 1 6 365 - -
Gabi287g00003 377 FunFam protein TWIN LOV 1 236 370 - -
Gabi287g00003 377 CDD PAS 247 332 IPR000014 -
Gabi287g00003 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 30 130 IPR035965 -
Gabi287g00003 377 Pfam PAS domain 41 132 IPR000014 -
Gabi287g00003 377 Pfam PAS domain 244 333 IPR000014 -
Gabi287g00003 377 SUPERFAMILY PYP-like sensor domain (PAS domain) 232 333 IPR035965 -
Gabi287g00003 377 Gene3D PAS domain 237 374 - -
Gabi287g00003 377 SMART pac_2 297 339 IPR001610 -
Gabi287g00003 377 SMART pac_2 95 138 IPR001610 -
Gabi287g00003 377 ProSiteProfiles PAS repeat profile. 18 67 IPR000014 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi287g00003 Gabi-Chr287 83612 87806 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi287g00003 238 363 AGC Kinase Gene Family AT5G58140 43.651 3.02e-31 123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi287g00003 - - gmx:100785562 560.451