Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2877g00025 ATGAAGTGTTTTTCATTCTACTACGGAGAGAAGAAGGACGATCCTAAGAGCTTGCAGTTGCCGTCATTATCGGGTCGGTCCAATAGTTCTACTTATGTTGAGGGAGAGATGAAGAGATCTGGTTCTGAATTAAATTCTCAGAATGCCTCAGACAATAGCACAGACTCCCTCAGGAGGAATGCATTTCCCAGTTTATCCCAAAGACCCAGCAACCTGAGAGTGTTTACTGTATCTGAACTGAAATCAGCTACAAAGAATTTTAGTCGCTCTGTTATGCTTGGAGAGGGAGGGTTTGGGTGTGTCTACAAGGGATTCATCAAGGGTGTTGATGAACCTTCTAGAAAAATTGAAGTTGCAGTTAAACAACTTGGTAGAAGAGGAATTCAGGGGCATAAGGAATGGGTAACAGAAGTGAATGTTCTGGGTATTGTTGAGCATCCCAATCTTGTGAAACTAGTTGGGTACTGTGCTGATGATGATGAAAGAGGAATCCAGAGGCTTCTGATTTATGAATATATGCCCAACGGCAGTGTGGAACACCATTTATCCCCACGATTAGAAACTCCTCTCCCATGGAATAGGAGATTGAAAATAGCCCAAGATGCAGCTCGTGGCTTAACTTACCTGCATGAGGAAATGGATTTTCAGATAATTTTCAGGGATTTCAAATCTTCAAATATCCTTCTGGACGAGGAATGGAATGCAAAGCTGTCAGACTTCGGGTTAGCAAGACTGGGACCATCTGATGGGCTAACTCATGTCTCAACAGCGATTGTAGGAACAATGGGGTATACAGCTCCTGAATATGTTCAAACTGGACGTCTAACATCAAAAAGTGATGTATGGAGCTATGGTGTCTTCCTTTATGAACTCATTACTGGCAGGCGCCCTTTAGATCGAAATCGGCCCAAGGGTGAGCAGAAGCTGTTGGAATGGATAAGGCCTTACCTTTCAGATGCTAAGAGATTTCAAATAATATTGGATCCAAGACTTGATAGAAAACAAAAACACCTCTTCAAGTCCGCTCAGAGACTTGCTGTAATAGCTAACCGATGCTTGGTCAGAAACCCAAAGAACCGTCCAAAGATGAGTGAAGTATTAGAAATGGTGAATAGGATTGTGGAGTATTCAGTGAGTACTAATCCACAGTCACCCTTGAAGAATGTAGCCTCAGTAGAAGCTTCTCAGGACACTGAAATAAAGAACAAGAATAGGATCATGGATCCAAAACCAGGAGTTTGTAATTGGTTTAGGATGTGGAGACCAAAGCTTTTAAGAGCATGTTGA 1287 0.4227 MKCFSFYYGEKKDDPKSLQLPSLSGRSNSSTYVEGEMKRSGSELNSQNASDNSTDSLRRNAFPSLSQRPSNLRVFTVSELKSATKNFSRSVMLGEGGFGCVYKGFIKGVDEPSRKIEVAVKQLGRRGIQGHKEWVTEVNVLGIVEHPNLVKLVGYCADDDERGIQRLLIYEYMPNGSVEHHLSPRLETPLPWNRRLKIAQDAARGLTYLHEEMDFQIIFRDFKSSNILLDEEWNAKLSDFGLARLGPSDGLTHVSTAIVGTMGYTAPEYVQTGRLTSKSDVWSYGVFLYELITGRRPLDRNRPKGEQKLLEWIRPYLSDAKRFQIILDPRLDRKQKHLFKSAQRLAVIANRCLVRNPKNRPKMSEVLEMVNRIVEYSVSTNPQSPLKNVASVEASQDTEIKNKNRIMDPKPGVCNWFRMWRPKLLRAC 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2877g00025 428 Gene3D Phosphorylase Kinase; domain 1 67 172 - -
Gabi2877g00025 428 CDD STKc_IRAK 93 373 - -
Gabi2877g00025 428 PANTHER OS01G0588500 PROTEIN-RELATED 51 372 - -
Gabi2877g00025 428 MobiDBLite consensus disorder prediction 11 63 - -
Gabi2877g00025 428 SUPERFAMILY Protein kinase-like (PK-like) 63 370 IPR011009 -
Gabi2877g00025 428 ProSitePatterns Protein kinases ATP-binding region signature. 93 121 IPR017441 GO:0005524
Gabi2877g00025 428 Pfam Protein tyrosine and serine/threonine kinase 92 368 IPR001245 GO:0004672|GO:0006468
Gabi2877g00025 428 MobiDBLite consensus disorder prediction 20 63 - -
Gabi2877g00025 428 ProSiteProfiles Protein kinase domain profile. 87 374 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2877g00025 428 FunFam Serine/threonine-protein kinase PCRK2 173 384 - -
Gabi2877g00025 428 Gene3D Transferase(Phosphotransferase) domain 1 173 394 - -
Gabi2877g00025 428 FunFam Serine/threonine-protein kinase BIK1 54 172 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2877g00025 Gabi-Chr2877 228599 232219 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2877g00025 1 367 Glycoside Hydrolase AT3G07070 43.915 5.91e-96 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Gabi2877g00025 PK_Tyr_Ser-Thr 1.8e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2877g00025 - - gmx:100305438 734.947