Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2877g00004 ATGTCTACCTCTGCGGCTTCTCTAGCACTTCCCACTCTCACTCTCCGAACACGACAACCTCTGTGTTCTCCTCAGTGTTTCTCTTCTTCCCTATCCCTCAACCCTAACTCAAAGCGCTTCTCCATTTCCGCGGCGTTTCTTCGTCCAACGTTGTCGTTGTCGTCTCGTTTCGTTTCCCATGTTGCTCTCTCCTCAGAGTTCGACCAGGAAGAAGACACCTTCAGCGGAGATGAACGTCCCAACTACTCCCCAGACCTCAAACTCTTCGTGGGTAATCTTCCTTTCAGTTGTGACAGTGCCCAACTCGCTGAGCTCTTCGAAAGTGCTGGGAATGTAGAGATGGTTGAGGTGATTTATGATAAAACGACTGGGAGAAGTAGGGGATTTGGTTTTGTTACCATGTCTTCCGCTGATGAAGTTGAAGCAGCTGCTCAACAGTTCAATGGTTATGAGCTAGATGGAAGGCAATTGAGAGTGAATTCTGGACCACCTCCTGCTCGGAATGAGAATTTCAGGAATGATAATTTCCGGAATGATAATTTCAGGAATGATAATTTCAGAAATGAGAATTTCAGGAATGATAATTTCAGAAATGACAATTTCCGTTCTAGAGGTGGCCCTCCTTCCAGAGGTGGTGGTCCTTCTTCAGATAGTGAACACCGTGTACATGTTGGTAATCTTGCTTGGGGTGTTGACCACTTTGCACTTGAGTCATTGTTTGCCGAACAAGGAAAGGTTTTGGAGGCAAAGGTAATCTATGACAGGGAAAGTGGAAGATCAAGAGGCTTTGGGTTTGTGACTTACGGTAGCTCTGAAGAGGTCAACAGTGCTATTCAGTCCTTAGATGGTGCGGACTTGAATGGCAGAGCTATACGAGTCTCTGCAGCAGATGCTAAGCCCAAGCGTCAATTTTGA 915 0.4634 MSTSAASLALPTLTLRTRQPLCSPQCFSSSLSLNPNSKRFSISAAFLRPTLSLSSRFVSHVALSSEFDQEEDTFSGDERPNYSPDLKLFVGNLPFSCDSAQLAELFESAGNVEMVEVIYDKTTGRSRGFGFVTMSSADEVEAAAQQFNGYELDGRQLRVNSGPPPARNENFRNDNFRNDNFRNDNFRNENFRNDNFRNDNFRSRGGPPSRGGGPSSDSEHRVHVGNLAWGVDHFALESLFAEQGKVLEAKVIYDRESGRSRGFGFVTYGSSEEVNSAIQSLDGADLNGRAIRVSAADAKPKRQF 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2877g00004 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 220 298 IPR000504 GO:0003723
Gabi2877g00004 304 Gene3D - 188 304 IPR012677 -
Gabi2877g00004 304 SUPERFAMILY RNA-binding domain, RBD 81 192 IPR035979 GO:0003676
Gabi2877g00004 304 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 86 164 IPR000504 GO:0003723
Gabi2877g00004 304 FunFam Ribonucleoprotein A, chloroplastic 63 186 - -
Gabi2877g00004 304 CDD RRM2_NsCP33_like 221 296 - -
Gabi2877g00004 304 SMART rrm1_1 87 160 IPR000504 GO:0003723
Gabi2877g00004 304 SMART rrm1_1 221 294 IPR000504 GO:0003723
Gabi2877g00004 304 SUPERFAMILY RNA-binding domain, RBD 214 303 IPR035979 GO:0003676
Gabi2877g00004 304 PANTHER OS02G0815200 PROTEIN 28 302 - -
Gabi2877g00004 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 223 292 IPR000504 GO:0003723
Gabi2877g00004 304 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 88 158 IPR000504 GO:0003723
Gabi2877g00004 304 Gene3D - 57 161 IPR012677 -
Gabi2877g00004 304 MobiDBLite consensus disorder prediction 172 199 - -
Gabi2877g00004 304 MobiDBLite consensus disorder prediction 157 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2877g00004 Gabi-Chr2877 44253 46404 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2877g00004 88 303 Eukaryotic Initiation Factors Gene Family AT1G49760 25.000 2.13e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2877g00004 - - gmx:100786275 395.201