Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2877g00003 ATGGCTTGTGATAGATATTCAAGATCTGTAAGATTTCATGATGATCTTGAAACTGAGATGTTAACAGAAAGCAAAGAAAGTCACTTGTCAATGCAGGACTATAAGATGAGAGGCAAACAGAATATTGGGAAGGATGCAATAAACAAGTCACTGGAAGGAAGAGAACTTTCTAGGGTCTTTTCTGAGGATTATGATGCAGCTGAGATATTAATATTGGATCCTAGGGGACCTAGAGTAAACAAATGGAACAAAATTTTCTTAGTAGCTTGTTTGATTTCATTGTTTGTGGATCCCCTATTCTTTTATTTACCAGTTGCTAAGAAAGACAAATGCATTGATATGTCTTCTGGTCTTGAAGTGTCCCTTACCATAATTCGGTCCATGGCTGATGCATTTTACATTATTCAGATTTATGTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGGTTGCAGCTAAGTACCTGCATAGAGACTTCTGGCTTGATCTAGTGGCTGCCCAACCACTTCCACAGGTGTTAATTTGGGCTGTAATTCCAAATCTAAAGGGGTCAGAAATGATTGCTTCACGGCATGTTTTGCGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTACCCTTTATCATCTGATATTGTCAAGGTAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATCTGATGCTCTATTTGCTGGCGAGTCATGTAAGATCCTCTTGGTACCTGTTATCAGTTGAAAGGCAGGATGAATGTTGGAAGAAAGCTTGTACTCTTGAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAAATAGGGCTGCTTGGTTCAGATCAAGCAATCTTTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGACTTTGGAAATCACGGGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCGGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTCTGCGGCTGGAAGAATGGAGAATAAGAAGAACAGATACGGAAAAATGGATGCATCACAGGCAGCTCCCTCTTTACCTGAAGCAAAATGTGCGACGTCATGACCAATTCAGATGGGTTGCTACTCGTGGAGTGGATGAAGAAACTATTCTCAGAGACCTTCCTGCGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGTACTCCAGGAACTTGCCTAGTTCGTGAAGGTGACCTTGTCACTGAGATGCTCTTCATTGTTAGAGGACGCCTAGATTCTTGTACAACCAATGGTGGCAGAACTGGTTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCTTTGGACCCTCGTCCAACTGTTGTCCTTCCATCCTCAACTCGCACAGTGAAAGCCATCACTGATGTGGAAGCTTTTGCACTCATTGCAGAGGACTTGACGTTTGTAGCAGCACAATTCCGCAGGTTACATAGCAAACAACTTAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACATGGGCTGCATGCTTTATACAATCAGCTTGGTTTAGGTATAAAAGAATGAAGGAGACAAGGGACCTAAAGAAAAAGGAGAATCTGATAATGGCTTATGTCCCTGGAACTGGTGGCACTGAATATTTCTCTGCACCTCTTCAGGCCCCAATGTGCTCAAGTTTTACAACTTATGCTGCTAAAATATCAGCCAACCCAAGGAAAGGTAGTAGCTTGAGATATGGTTCTGAACTTGACATTCTTGGTTCATTAAGGAAGCCCCTTGAACCAGACTTCACTGATGATGATAGATGA 2121 0.421 MACDRYSRSVRFHDDLETEMLTESKESHLSMQDYKMRGKQNIGKDAINKSLEGRELSRVFSEDYDAAEILILDPRGPRVNKWNKIFLVACLISLFVDPLFFYLPVAKKDKCIDMSSGLEVSLTIIRSMADAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKVAAKYLHRDFWLDLVAAQPLPQVLIWAVIPNLKGSEMIASRHVLRLVSIFQYLLRLYLIYPLSSDIVKVNGVMMEKAWAGAAYNLMLYLLASHVRSSWYLLSVERQDECWKKACTLEYPHCQYHYLDCQSIGDPNRAAWFRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFFNKYYYCLWWGLRNLSSAGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTEKWMHHRQLPLYLKQNVRRHDQFRWVATRGVDEETILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDLVTEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITDVEAFALIAEDLTFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQSAWFRYKRMKETRDLKKKENLIMAYVPGTGGTEYFSAPLQAPMCSSFTTYAAKISANPRKGSSLRYGSELDILGSLRKPLEPDFTDDDR 706
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2877g00003 706 Gene3D - 85 397 - -
Gabi2877g00003 706 SUPERFAMILY Voltage-gated potassium channels 73 395 - -
Gabi2877g00003 706 SUPERFAMILY cAMP-binding domain-like 403 595 IPR018490 -
Gabi2877g00003 706 Gene3D Helix hairpin bin 401 464 - -
Gabi2877g00003 706 Gene3D Jelly Rolls 471 591 IPR014710 -
Gabi2877g00003 706 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 661 - -
Gabi2877g00003 706 CDD CAP_ED 473 604 IPR000595 -
Gabi2877g00003 706 ProSiteProfiles cAMP/cGMP binding motif profile. 473 558 IPR000595 -
Gabi2877g00003 706 FunFam Cyclic nucleotide-gated ion channel 1 471 589 - -
Gabi2877g00003 706 SMART cnmp_10 473 604 IPR000595 -
Gabi2877g00003 706 Pfam Ion transport protein 82 400 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2877g00003 Gabi-Chr2877 35089 40353 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2877g00003 48 704 Ion Channels AT2G28260 63.982 0.0 880
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2877g00003 K05391 - gmx:100815543 1217.99