Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2877g00002 ATGGCTTGTGATAGATATTCAAGATCTGTAAGATTTCATGATGATCTTGAAACTGAGATGTTAACAGAAAGCAAAGAAAGTCACTTGTCAATGCAGGACTATAAGATGAGAGGCAAACAGAATATTGGGAAGGATGCAATAAACAAGTCACTGGAAGGAAGAGAACTTTCTAGGGTCTTTTCTGAGGATTATGATGCAGCTGAGATATTAATATTGGATCCTAGGGGACCTAGAGTAAACAAATGGAACAAAATTTTCTTAGTAGCTTGTTTGATTTCATTGTTTGTGGATCCCCTATTCTTTTATTTACCAGTTGCTAAGAAAGACAAATGCATTGATATGTCTTCTGGTCTTGAAGTGTCCCTTACCATAATTCGGTCCATGGCTGATGCATTTTACATTATTCAGATTTATGTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGGTTGCAGCTAAGTACCTGCATAGAGACTTCTGGCTTGATCTAGTGGCTGCCCAACCACTTCCACAGGTGTTAATTTGGGCTGTAATTCCAAATCTAAAGGGGTCAGAAATGATTGCTTCACGGCATGTTTTGCGCCTTGTTTCCATTTTCCAGTACCTCTTGAGGTTGTATCTTATTTACCCTTTATCATCTGATATTGTCAAGGTAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATCTGATGCTCTATTTGCTGGCGAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCAGTTGAAAGGCAGGATGAATGTTGGAAGAAAGCTTGTACTCTTGAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAAATAGGGCTGCTTGGTTCAGATCAAGCAATCTTTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGACTTTGGAAATCACGGGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCGGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTCTGCGGCTGGAAGAATGGAGAATAAGAAGAACAGATACGGAAAAATGGATGCATCACAGGCAGCTCCCTCTTTACCTGAAGCAAAATGTGCGACGTCATGACCAATTCAGATGGGTTGCTACTCGTGGAGTGGATGAAGAAACTATTCTCAGAGACCTTCCTGCGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGTACTCCAGGAACTTGCCTAGTTCGTGAAGGTGACCTTGTCACTGAGATGCTCTTCATTGTTAGAGGACGCCTAGATTCTTGTACAACCAATGGTGGCAGAACTGGTTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCTTTGGACCCTCGTCCAACTGTTGTCCTTCCATCCTCAACTCGCACAGTGAAAGCCATCACTGATGTGGAAGCTTTTGCACTCATTGCAGAGGACTTGACGTTTGTAGCAGCACAATTCCGCAGGTTACATAGCAAACAACTTAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACATGGGCTGCATGCTTTATACAATCAGCTTGGTTTAGGTATAAAAGAATGAAGGAGACAAGGGACCTAAAGAAAAAGGAGAATCTGATAATGGCTTATGTCCCTGGAACTGGTGGCACTGAATATTTCTCTGCACCTCTTCAGGCCCCAATGTGCTCAAGTTTTACAACTTATGCTGCTAAAATATCAGCCAACCCAAGGAAAGGTAGTAGCTTGAGATATGGTTCTGAACTTGACATTCTTGGTTCATTAAGGAAGCCCCTTGAACCAGACTTCACTGATGATGATAGATGA 2124 0.4209 MACDRYSRSVRFHDDLETEMLTESKESHLSMQDYKMRGKQNIGKDAINKSLEGRELSRVFSEDYDAAEILILDPRGPRVNKWNKIFLVACLISLFVDPLFFYLPVAKKDKCIDMSSGLEVSLTIIRSMADAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKVAAKYLHRDFWLDLVAAQPLPQVLIWAVIPNLKGSEMIASRHVLRLVSIFQYLLRLYLIYPLSSDIVKVNGVMMEKAWAGAAYNLMLYLLASHVLGSSWYLLSVERQDECWKKACTLEYPHCQYHYLDCQSIGDPNRAAWFRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFFNKYYYCLWWGLRNLSSAGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTEKWMHHRQLPLYLKQNVRRHDQFRWVATRGVDEETILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDLVTEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITDVEAFALIAEDLTFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQSAWFRYKRMKETRDLKKKENLIMAYVPGTGGTEYFSAPLQAPMCSSFTTYAAKISANPRKGSSLRYGSELDILGSLRKPLEPDFTDDDR 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2877g00002 707 Gene3D Jelly Rolls 472 592 IPR014710 -
Gabi2877g00002 707 ProSiteProfiles cAMP/cGMP binding motif profile. 474 559 IPR000595 -
Gabi2877g00002 707 Gene3D Helix hairpin bin 402 465 - -
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 369 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 254 264 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 343 360 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 437 444 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 137 146 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 PRINTS EAG/ELK/ERG potassium channel family signature 387 396 IPR003938 GO:0005249|GO:0006813|GO:0016020
Gabi2877g00002 707 Gene3D - 85 398 - -
Gabi2877g00002 707 FunFam Cyclic nucleotide-gated ion channel 1 472 590 - -
Gabi2877g00002 707 SUPERFAMILY cAMP-binding domain-like 404 596 IPR018490 -
Gabi2877g00002 707 CDD CAP_ED 474 605 IPR000595 -
Gabi2877g00002 707 Pfam Ion transport protein 82 401 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi2877g00002 707 SMART cnmp_10 474 605 IPR000595 -
Gabi2877g00002 707 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 53 662 - -
Gabi2877g00002 707 SUPERFAMILY Voltage-gated potassium channels 73 396 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2877g00002 Gabi-Chr2877 35089 40353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2877g00002 48 705 Ion Channels AT2G28260 64.286 0.0 890
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2877g00002 K05391 - gmx:100815543 1227.23