LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2877g00001	ATGGCTTGTGATAGATATTCAAGATCTGTAAGATTTCATGATGATCTTGAAACTGAGATGTTAACAGAAAGCAAAGAAAGTCACTTGTCAATGCAGGACTATAAGATGAGAGGCAAACAGAATATTGGGAAGGATGCAATAAACAAGTCACTGGAAGGAAGAGAACTTTCTAGGGTCTTTTCTGAGGATTATGATGCAGCTGAGATATTAATATTGGATCCTAGGGGACCTAGAGTAAACAAATGGAACAAAATTTTCTTAGTAGCTTGTTTGATTTCATTGTTTGTGGATCCCCTATTCTTTTATTTACCAGTTGCTAAGAAAGACAAATGCATTGATATGTCTTCTGGTCTTGAAGTGTCCCTTACCATAATTCGGTCCATGGCTGATGCATTTTACATTATTCAGATTTATGTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGGTTGCAGCTAAGTACCTGCATAGAGACTTCTGGCTTGATCTAGTGGCTGCCCAACCACTTCCACAGGTAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATCTGATGCTCTATTTGCTGGCGAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCAGTTGAAAGGCAGGATGAATGTTGGAAGAAAGCTTGTACTCTTGAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAAATAGGGCTGCTTGGTTCAGATCAAGCAATCTTTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGACTTTGGAAATCACGGGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCGGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTCTGCGGCTGGAAGAATGGAGAATAAGAAGAACAGATACGGAAAAATGGATGCATCACAGGCAGCTCCCTCTTTACCTGAAGCAAAATGTGCGACGTCATGACCAATTCAGATGGGTTGCTACTCGTGGAGTGGATGAAGAAACTATTCTCAGAGACCTTCCTGCGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGTACTCCAGGAACTTGCCTAGTTCGTGAAGGTGACCTTGTCACTGAGATGCTCTTCATTGTTAGAGGACGCCTAGATTCTTGTACAACCAATGGTGGCAGAACTGGTTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCTTTGGACCCTCGTCCAACTGTTGTCCTTCCATCCTCAACTCGCACAGTGAAAGCCATCACTGATGTGGAAGCTTTTGCACTCATTGCAGAGGACTTGACGTTTGTAGCAGCACAATTCCGCAGGTTACATAGCAAACAACTTAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACATGGGCTGCATGCTTTATACAATCAGCTTGGTTTAGGTATAAAAGAATGAAGGAGACAAGGGACCTAAAGAAAAAGGAGAATCTGATAATGGCTTATGTCCCTGGAACTGGTGGCACTGAATATTTCTCTGCACCTCTTCAGGCCCCAATGTGCTCAAGTTTTACAACTTATGCTGCTAAAATATCAGCCAACCCAAGGAAAGGTAGTAGCTTGAGATATGGTTCTGAACTTGACATTCTTGGTTCATTAAGGAAGCCCCTTGAACCAGACTTCACTGATGATGATAGATGA	1986	0.4235	MACDRYSRSVRFHDDLETEMLTESKESHLSMQDYKMRGKQNIGKDAINKSLEGRELSRVFSEDYDAAEILILDPRGPRVNKWNKIFLVACLISLFVDPLFFYLPVAKKDKCIDMSSGLEVSLTIIRSMADAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKVAAKYLHRDFWLDLVAAQPLPQVNGVMMEKAWAGAAYNLMLYLLASHVLGSSWYLLSVERQDECWKKACTLEYPHCQYHYLDCQSIGDPNRAAWFRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFFNKYYYCLWWGLRNLSSAGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTEKWMHHRQLPLYLKQNVRRHDQFRWVATRGVDEETILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDLVTEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITDVEAFALIAEDLTFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQSAWFRYKRMKETRDLKKKENLIMAYVPGTGGTEYFSAPLQAPMCSSFTTYAAKISANPRKGSSLRYGSELDILGSLRKPLEPDFTDDDR	661

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2877g00001	661	PANTHER	CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED	188	616	-	-
	Gabi2877g00001	661	Pfam	Ion transport protein	192	355	IPR005821	GO:0005216\|GO:0006811\|GO:0016020\|GO:0055085
	Gabi2877g00001	661	SUPERFAMILY	Voltage-gated potassium channels	73	350	-	-
	Gabi2877g00001	661	Gene3D	Jelly Rolls	426	546	IPR014710	-
	Gabi2877g00001	661	Gene3D	Helix hairpin bin	356	419	-	-
	Gabi2877g00001	661	FunFam	Cyclic nucleotide-gated ion channel 1	426	544	-	-
	Gabi2877g00001	661	CDD	CAP_ED	428	559	IPR000595	-
	Gabi2877g00001	661	ProSiteProfiles	cAMP/cGMP binding motif profile.	428	513	IPR000595	-
	Gabi2877g00001	661	SMART	cnmp_10	428	559	IPR000595	-
	Gabi2877g00001	661	SUPERFAMILY	cAMP-binding domain-like	358	550	IPR018490	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2877g00001	Gabi-Chr2877	35089	40353	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2877g00001	48	659	Ion Channels	AT2G28260	60.486	0.0	810

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2877g00001	K05391		-	gmx:100815543	1124.38

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