Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2877g00001 ATGGCTTGTGATAGATATTCAAGATCTGTAAGATTTCATGATGATCTTGAAACTGAGATGTTAACAGAAAGCAAAGAAAGTCACTTGTCAATGCAGGACTATAAGATGAGAGGCAAACAGAATATTGGGAAGGATGCAATAAACAAGTCACTGGAAGGAAGAGAACTTTCTAGGGTCTTTTCTGAGGATTATGATGCAGCTGAGATATTAATATTGGATCCTAGGGGACCTAGAGTAAACAAATGGAACAAAATTTTCTTAGTAGCTTGTTTGATTTCATTGTTTGTGGATCCCCTATTCTTTTATTTACCAGTTGCTAAGAAAGACAAATGCATTGATATGTCTTCTGGTCTTGAAGTGTCCCTTACCATAATTCGGTCCATGGCTGATGCATTTTACATTATTCAGATTTATGTTCGGTTTCAAACTGCTTATATTGCTCCTTCCTCTCGTGTTTCTGGTAGAGGAGAGCTTATTATAGACTCTTCAAAGGTTGCAGCTAAGTACCTGCATAGAGACTTCTGGCTTGATCTAGTGGCTGCCCAACCACTTCCACAGGTAAATGGGGTAATGATGGAAAAAGCTTGGGCTGGGGCAGCATATAATCTGATGCTCTATTTGCTGGCGAGTCATGTTTTAGGATCCTCTTGGTACCTGTTATCAGTTGAAAGGCAGGATGAATGTTGGAAGAAAGCTTGTACTCTTGAGTACCCACACTGCCAGTATCATTATCTTGATTGTCAAAGCATAGGTGACCCAAATAGGGCTGCTTGGTTCAGATCAAGCAATCTTTCAGGTCTATGTGATCAGAACAGTGATTTCTTTCAGTTTGGCATTTTTGCTGATGCTCTGACTTTGGAAATCACGGGCTCAAAATTCTTCAACAAATACTATTACTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTGCAGGACAGAATCTCTTAACAAGCACACATGTTGCAGAGATAAATTTTGCGGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTTATAGGCAATATGCAAACCTACCTGCAATCCACCACTCTGCGGCTGGAAGAATGGAGAATAAGAAGAACAGATACGGAAAAATGGATGCATCACAGGCAGCTCCCTCTTTACCTGAAGCAAAATGTGCGACGTCATGACCAATTCAGATGGGTTGCTACTCGTGGAGTGGATGAAGAAACTATTCTCAGAGACCTTCCTGCGGATCTCAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTCGACAAGTACCACTATTTGATCAGATGGATGAAAGGATGCTAGATGCAATATGTGAAAGGTTGAAGCCTTCTCTGTGTACTCCAGGAACTTGCCTAGTTCGTGAAGGTGACCTTGTCACTGAGATGCTCTTCATTGTTAGAGGACGCCTAGATTCTTGTACAACCAATGGTGGCAGAACTGGTTTCTTTAACTCATGCAGAATTGGCTCTGGTGACTTCTGTGGTGAAGAGCTCTTGCCATGGGCTTTGGACCCTCGTCCAACTGTTGTCCTTCCATCCTCAACTCGCACAGTGAAAGCCATCACTGATGTGGAAGCTTTTGCACTCATTGCAGAGGACTTGACGTTTGTAGCAGCACAATTCCGCAGGTTACATAGCAAACAACTTAGGCACACGTTCAGGTTCCATTCCCATCAGTGGAGGACATGGGCTGCATGCTTTATACAATCAGCTTGGTTTAGGTATAAAAGAATGAAGGAGACAAGGGACCTAAAGAAAAAGGAGAATCTGATAATGGCTTATGTCCCTGGAACTGGTGGCACTGAATATTTCTCTGCACCTCTTCAGGCCCCAATGTGCTCAAGTTTTACAACTTATGCTGCTAAAATATCAGCCAACCCAAGGAAAGGTAGTAGCTTGAGATATGGTTCTGAACTTGACATTCTTGGTTCATTAAGGAAGCCCCTTGAACCAGACTTCACTGATGATGATAGATGA 1986 0.4235 MACDRYSRSVRFHDDLETEMLTESKESHLSMQDYKMRGKQNIGKDAINKSLEGRELSRVFSEDYDAAEILILDPRGPRVNKWNKIFLVACLISLFVDPLFFYLPVAKKDKCIDMSSGLEVSLTIIRSMADAFYIIQIYVRFQTAYIAPSSRVSGRGELIIDSSKVAAKYLHRDFWLDLVAAQPLPQVNGVMMEKAWAGAAYNLMLYLLASHVLGSSWYLLSVERQDECWKKACTLEYPHCQYHYLDCQSIGDPNRAAWFRSSNLSGLCDQNSDFFQFGIFADALTLEITGSKFFNKYYYCLWWGLRNLSSAGQNLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTLRLEEWRIRRTDTEKWMHHRQLPLYLKQNVRRHDQFRWVATRGVDEETILRDLPADLRRDIKRHLCLNLVRQVPLFDQMDERMLDAICERLKPSLCTPGTCLVREGDLVTEMLFIVRGRLDSCTTNGGRTGFFNSCRIGSGDFCGEELLPWALDPRPTVVLPSSTRTVKAITDVEAFALIAEDLTFVAAQFRRLHSKQLRHTFRFHSHQWRTWAACFIQSAWFRYKRMKETRDLKKKENLIMAYVPGTGGTEYFSAPLQAPMCSSFTTYAAKISANPRKGSSLRYGSELDILGSLRKPLEPDFTDDDR 661
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2877g00001 661 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 188 616 - -
Gabi2877g00001 661 Pfam Ion transport protein 192 355 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Gabi2877g00001 661 SUPERFAMILY Voltage-gated potassium channels 73 350 - -
Gabi2877g00001 661 Gene3D Jelly Rolls 426 546 IPR014710 -
Gabi2877g00001 661 Gene3D Helix hairpin bin 356 419 - -
Gabi2877g00001 661 FunFam Cyclic nucleotide-gated ion channel 1 426 544 - -
Gabi2877g00001 661 CDD CAP_ED 428 559 IPR000595 -
Gabi2877g00001 661 ProSiteProfiles cAMP/cGMP binding motif profile. 428 513 IPR000595 -
Gabi2877g00001 661 SMART cnmp_10 428 559 IPR000595 -
Gabi2877g00001 661 SUPERFAMILY cAMP-binding domain-like 358 550 IPR018490 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2877g00001 Gabi-Chr2877 35089 40353 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2877g00001 48 659 Ion Channels AT2G28260 60.486 0.0 810
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2877g00001 K05391 - gmx:100815543 1124.38