Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00020 ATGGAAATGGAAGATCATCATCATCACCATCATAACCATAACCATAACCATCACCATCAACAACAACAACAGCAACAGCTGCAGCAGTATGGCATGACCGATCTCAGGCAACTCGTGAACGAACCAAGGTCATCGACGGCGACCCATTTCCCCCCCGTACAAGCACAACCTACGGCTGAGGTTTTTTCCGGTCATCGGAATCTGACGACGTTGGCCACTTCCCACCATCAACACCAACACTACGAGATGATGATGATGTTTGGTCGTGACATAATGCCACGTGGCCTTCACGACTTTGCCTCCACCGATTCTGCTGCTGCTGCTAACATCACTAGTGCTTCAACTCCATCCCTTAGTGGCTTAGAGGCTGAGACCGCAGGCTGCATCGGTGGAGACGCATCCACCGGAAGATGGCCCAGACAAGAGACTCTTACTCTTCTTGAAATCAGATCTAAGCTTGACCCTAAATTCAAAGAGGCTAATCAAAAGGGACCCTTATGGGATGAAGTTTCTAGGATCATGTCTGAAGAGCATGGATATCAAAGGAGTGGGAAAAAGTGCAGAGAGAAGTTTGAGAACCTGTACAAATATTACAAGAAGACAAAAGAAGGTAAAGCTGGAAGACATGATGGGAAGCATTATAGATTCTTTCGTCAACTTGAAGCCTTATATGGAGAAAACAGTAATCAAACCTCAGTTCCAGAAACCAATAATCTTGTTACCAACCTTCATTTCCAAACAAATCAAGAGAAGTTTCAGTCTCAAAAGCATTGTGATAGCCTAAGCCTCACTAACTCCACTGAGTTTGGAACATCTTCATCTGATGATGACAATGACCAAAGCATTCATGAGGGGCTCATGGAGAATCATGATGACTCCATGGAGAAGAGGAAAAAGAAAAAGAATGGGAAGAGTTGGAAGGTAAAGATAAAAAATTTCATTGACTCTCAAATGAGGAAGCTGGTGGAGAAGCAAGAGGAATGGTTGGATAAACTTGTGAAGACACTTGAAGAGAAGGAAAAGGAGAGGATGTTAAGAGAAGAAGAGTGGAGGAAACAAGAGGCAACAAGGTTAGAGAGGGAGCACAAGTTTTGGGCTAAAGAAAGAGCATGGATTGAAGCCAGAGATGCTGCTTTAATGGAGGCTTTGCAAAATTTAACAGGAAGAGAATTAAAAGCTGAAGAAGCTCCTGAGAGTGTAATGATAGCTGAAATTCGAAACCAAAGCGAAAACCAGAATGAAGATGGAAGTGAAATCTTGAATAGCACTATCAGAGGTAGTGATATTAGCTGGTCAGAATCTGAGATTACAAGGCTTCAACAGTTGAAAGCTGAGATGGAGACAAGGTTTCCACAAAGTGAATGTTCAGAAGAAATTGCATGGGAGGAAGTAGCAAACAAAATGGCTTGCTTTGGTTACAAAAGAACTGCTTTAATGTACAAAGAGAAATGGGAAAGTATTAGCAACTATCAAAGGGATGCAAAGGAAGGTAACAAGAAGAGAAAGGAAAATTCAAGAAATTGTTTTTACTTCAAGAACAATGATATTCAATCTTCTCTATACAATCAAGGAAGTAGCTATGGTGATATCAATGATCGGCTACTAACACATGATGGTTCTTCACCTTCAAATTCCAATGTTGGAAATGTTGCTGCTGTGGCTGAAAGTTGCTTCCCCTTCTTGATGAGTACTGAGGAAGGGAATTTGTGGGAGAACTATGGCTTAAAGCTCAATAAAGCAAACCAAAACCATTGA 1755 0.4177 MEMEDHHHHHHNHNHNHHHQQQQQQQLQQYGMTDLRQLVNEPRSSTATHFPPVQAQPTAEVFSGHRNLTTLATSHHQHQHYEMMMMFGRDIMPRGLHDFASTDSAAAANITSASTPSLSGLEAETAGCIGGDASTGRWPRQETLTLLEIRSKLDPKFKEANQKGPLWDEVSRIMSEEHGYQRSGKKCREKFENLYKYYKKTKEGKAGRHDGKHYRFFRQLEALYGENSNQTSVPETNNLVTNLHFQTNQEKFQSQKHCDSLSLTNSTEFGTSSSDDDNDQSIHEGLMENHDDSMEKRKKKKNGKSWKVKIKNFIDSQMRKLVEKQEEWLDKLVKTLEEKEKERMLREEEWRKQEATRLEREHKFWAKERAWIEARDAALMEALQNLTGRELKAEEAPESVMIAEIRNQSENQNEDGSEILNSTIRGSDISWSESEITRLQQLKAEMETRFPQSECSEEIAWEEVANKMACFGYKRTALMYKEKWESISNYQRDAKEGNKKRKENSRNCFYFKNNDIQSSLYNQGSSYGDINDRLLTHDGSSPSNSNVGNVAAVAESCFPFLMSTEEGNLWENYGLKLNKANQNH 584
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00020 584 Pfam Myb/SANT-like DNA-binding domain 137 223 IPR044822 -
Gabi2874g00020 584 Pfam Myb/SANT-like DNA-binding domain 430 513 IPR044822 -
Gabi2874g00020 584 SMART sant 427 490 IPR001005 -
Gabi2874g00020 584 SMART sant 134 197 IPR001005 -
Gabi2874g00020 584 Coils Coil 322 349 - -
Gabi2874g00020 584 CDD GT1 137 202 - -
Gabi2874g00020 584 PANTHER FI21293P1 70 542 - -
Gabi2874g00020 584 MobiDBLite consensus disorder prediction 263 303 - -
Gabi2874g00020 584 CDD GT1 431 495 - -
Gabi2874g00020 584 Gene3D - 431 492 - -
Gabi2874g00020 584 Gene3D - 138 200 - -
Gabi2874g00020 584 FunFam trihelix transcription factor PTL-like 138 200 - -
Gabi2874g00020 584 MobiDBLite consensus disorder prediction 277 299 - -
Gabi2874g00020 584 Coils Coil 577 584 - -
Gabi2874g00020 584 FunFam Trihelix transcription factor GT-2 431 493 - -
Gabi2874g00020 584 MobiDBLite consensus disorder prediction 1 28 - -
Gabi2874g00020 584 ProSiteProfiles Myb-like domain profile. 130 195 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00020 Gabi-Chr2874 317167 320487 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00020 24 579 Trihelix Transcription Factor Family AT5G03680 45.409 1.26e-142 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Gabi2874g00020 Myb_DNA-bind_4 7.5e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00020 - - aprc:113870891 770.77