Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00013 ATGGAGAGTTCACGTAGACCGTTCGATAGATCGAGAGAACCGGGTCCGAAGAAGCCCCGATTGATGGATCCGAGTCCGAGTGGCAGAACGTTTCCTCAACGACAAGTGGGTTCTGGGATTACGACGTTGGCGTCTGCAAGGTTTAGAACAAACAACAGAGACTTGGAAAGCAGCGATTTTGGTCGTGGTGGTGACGCCGCCAGCGGTGGCGGTTATCAGCCGCAGCCGCCGCCGTTCCAGGAGCTTGTGGCTCAGTATAAGACCGCGCTTGCCGAGCTTACTTTCAACTCTAAACCAATAATCACGAACTTGACTATAATTGCAGGCGAGAACCAATCTGCAGAGAAGGCCATTGCCTCCACTATTTGTGCTAACATTCTAGAGGTTCCTAGTGAACAAAAGCTGCCATCTCTGTATCTCTTAGACAGTATTGTTAAGAATATTGGGCGGGATTATATAAAATATTTTGCTGCCAGACTACCTGAGGTATTCTGCAAGGCATACAGACAGGTTGATCCTTCTGTCCATCAGAGTATGAGGCATCTTTTTGGAACTTGGAAAGGAGTCTTTCCTCCTCAGACCCTTCAGGTTATTGAGAAGGAACTGGGCTTCACTCCTGCTGTCAATGGTTCATCTTCCTCATCTGCTACACTCAGGAGTGATTCACAGTCACAACGTCCACCTCATAGTATACATGTGAATCCCAAGTATTTAGAAAGACAGCGTCTTCAGCAGTCCGGGAAGGATAATCAGCGCACTAATAAAGATACATTCAATGATTCTGTTCCGGAAAAGACCACTGGTGCATCATATGGAAGCAATGAATATGGTTCTGATCTTTCAAGGAATTTGGGCTTGGGTATTGGCAGAACTGGTGGTAGAGTGACTGAGTTAGGACATGATAAAAGTTGGTTCAAAGCAGGTGTTGTTCCAGGGACTGTATCTGGGCAAAGAAATGGTTTCAGTCTCAAGAATAGTTTTTCGAATATTGAATCACCAAAGTCCATGATTTTGGATGCACATCATCAGCCAACACAAAACATAACTAGCACACGCAGCAATGCGATAACAAATAGCTGGAAAAATTCTGAGGAAGAAGAGTTCATGTGGGAGGAGATGAACTCTGGATTGAGTGGTCATGGTGCATCCAGTATCTCTAACAATGTGAGCAAAGATTCTTGGACTGTTGATGATGAGAATTTGGAAGTTGAAGATCAACTCCAAATTAGAAATCCTTTGGGGGCAAATGTTGATAGAGAAATTCCCATTGAATGTCTAGCCACTGAAAAGAAACAAATGCCTGCATTTCGGCATCATCCGTCATTATCATGGCAATTGCAGGAGCAGCACTCAATTGATGAGTTGAATCAGAAGCCAGGTCACTCAGATGGATTTGTGTCCATGCATGGTGCCCTGCCAACCAATACAAATTCTTCTGCTGGCAGGATGGGGAATCGGCCTTTCCTGCCGAATGCAACAATAGGATTAGCGGGACAACAATTTCATTCTGTGGGAACTGAATCCCCTTCTGGGCAGTCGCCTTTGCGACAACCGTCTTCATCACCGCTAGTAACTATGCACTACCCTAATCCAATGCAAAATTTGCCCGATCAAGACTGTCCCCAGACTTTTAAAACATCGCAATTTTTGGGAGGTCTGCAGAGCCAATATATTAAAGAGTCTTCCCCTGCCCTTCCTCATAATGCTCAGGTTGGTAACTTGAGGAAATCACAGCTAAAGGACTTGCACGGTCCATTCTCTTCAAATACTTTTCAGCCAAGGAAGCAGCAGCAACTGGGTTCTTCTCACACGGAAGTTACTGTTAAGACTGTGAAGCCTCCCCTGTCCAAAGTTAATCTAGCTAGAGAAACTTTAGAACCGTCAACCACAAGTCGTTTGGAAGCTGCAGCTGTTCAGAGTGGAATTTTCAACAGGCCAATTACTAGTAGTCTTCCTACTACAAGTAGCCTGGATACAGGGAATCTTCCATCTCAATTAGGGGTTCGACCTTGCCGGTCGGGTGGTCCTTCCCCTGCCACAGTAATTTCTTCAGTGTCCACAATTGCATCTCCATCTTCATTAGGTCCTCCCAATGTTAATTTGTCTGCTATTCCAAAAATACCTCAAAGAAAGGCTGGACAACCACCAAGGGCATCATCTACTCTACGACCAGCTTCCTCTAATGTCAGCAGTGCCTCAGCCCTGACTTCAAGCGCCACTGATAATAACTTAAATCCAATTGCAAACCTTTTAAGCTCATTAGTTGCAAAGGGTTTGATATCTGCAGAAACAGAATTACTGACGAAGGAACCATCTGAGATGCTGATTCAATTGGAAGATCGAAGTGACAGCATTACCACCAGTAGCTCTTTGCCAGTTGCTTCAGTGTCTGGTTCTGCAGCTGTCCCTGTCCCTTTTACCAAAGATGAGATAGATGATACTGTAAAAACACCTACATCCTTACCTGAAGCAAGCAGCACAGAAATCAGAAATCTCATTGGCTTTGAGTTTAAGCCTGATGTAATCCGAGAATTGAATCCATCCGTAATTAGCGGATTATTTGATGATCTTCCACATCGTTGCAGCATCTGTGGCCTTAGGCTTAAATTCCAAGAACAGTTTAATAGACACTTGGAATGGCATGCCACAAGAGAAAAAGAACAAAATGGTCTAATTAGGGCATCAAGATGGTATCCAAAGTCTAATGACTGGATTGTTGCCAAGACTGAATATTCATCTGAGAATGAGTTTACTGAGTCCGTGGATACATGTAGCGAGCAAACAGACAGAAATCAAGAGGGCACAATGGTTCTAGCAGATGAAAAGCAATGCTTGTGTGTGTTGTGTGGTGAGCTATTTGAAGATTTTTACTGCCAGGAAAATGGTGAGTGGATGTTCAAAGGGGCTATTTACATGACTAACTCTGATAGCCATAGTGAGATGGGAATTAGAGATGTGATTACTGGAAGGGGTCCCATCATTCATGCAAGATGCTTATCAGATAACTTGATATCCAGGGTCCTTAAGACGGAACAGGATTAA 3042 0.4418 MESSRRPFDRSREPGPKKPRLMDPSPSGRTFPQRQVGSGITTLASARFRTNNRDLESSDFGRGGDAASGGGYQPQPPPFQELVAQYKTALAELTFNSKPIITNLTIIAGENQSAEKAIASTICANILEVPSEQKLPSLYLLDSIVKNIGRDYIKYFAARLPEVFCKAYRQVDPSVHQSMRHLFGTWKGVFPPQTLQVIEKELGFTPAVNGSSSSSATLRSDSQSQRPPHSIHVNPKYLERQRLQQSGKDNQRTNKDTFNDSVPEKTTGASYGSNEYGSDLSRNLGLGIGRTGGRVTELGHDKSWFKAGVVPGTVSGQRNGFSLKNSFSNIESPKSMILDAHHQPTQNITSTRSNAITNSWKNSEEEEFMWEEMNSGLSGHGASSISNNVSKDSWTVDDENLEVEDQLQIRNPLGANVDREIPIECLATEKKQMPAFRHHPSLSWQLQEQHSIDELNQKPGHSDGFVSMHGALPTNTNSSAGRMGNRPFLPNATIGLAGQQFHSVGTESPSGQSPLRQPSSSPLVTMHYPNPMQNLPDQDCPQTFKTSQFLGGLQSQYIKESSPALPHNAQVGNLRKSQLKDLHGPFSSNTFQPRKQQQLGSSHTEVTVKTVKPPLSKVNLARETLEPSTTSRLEAAAVQSGIFNRPITSSLPTTSSLDTGNLPSQLGVRPCRSGGPSPATVISSVSTIASPSSLGPPNVNLSAIPKIPQRKAGQPPRASSTLRPASSNVSSASALTSSATDNNLNPIANLLSSLVAKGLISAETELLTKEPSEMLIQLEDRSDSITTSSSLPVASVSGSAAVPVPFTKDEIDDTVKTPTSLPEASSTEIRNLIGFEFKPDVIRELNPSVISGLFDDLPHRCSICGLRLKFQEQFNRHLEWHATREKEQNGLIRASRWYPKSNDWIVAKTEYSSENEFTESVDTCSEQTDRNQEGTMVLADEKQCLCVLCGELFEDFYCQENGEWMFKGAIYMTNSDSHSEMGIRDVITGRGPIIHARCLSDNLISRVLKTEQD 1013
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 28 51 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 714 738 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 647 663 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 1 76 - -
Gabi2874g00013 1013 ProSiteProfiles CID domain profile. 78 206 IPR006569 -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 502 521 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 260 276 - -
Gabi2874g00013 1013 Gene3D - 77 203 IPR008942 -
Gabi2874g00013 1013 FunFam polyadenylation and cleavage factor homolog 4 75 203 - -
Gabi2874g00013 1013 SMART 558neu5 81 203 IPR006569 -
Gabi2874g00013 1013 SUPERFAMILY ENTH/VHS domain 81 203 IPR008942 -
Gabi2874g00013 1013 CDD CID_Pcf11 83 195 IPR047415 -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 647 738 - -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 208 276 - -
Gabi2874g00013 1013 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 51 1001 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 677 699 - -
Gabi2874g00013 1013 ProSitePatterns Zinc finger C2H2 type domain signature. 861 881 IPR013087 -
Gabi2874g00013 1013 Pfam CID domain 87 196 IPR006569 -
Gabi2874g00013 1013 MobiDBLite consensus disorder prediction 208 230 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00013 Gabi-Chr2874 251043 259158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00013 833 998 C2H2 Transcription Factor Family AT4G04885 38.596 1.78e-30 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2874g00013 CID 3.9e-14 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00013 K14400 - gmx:100807857 1286.17