Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00011 ATGAACAACCCCAATGATGAAAATGAGAACTCTTCCATGGAGTTGGGTTCCGAAGCACTTTTTTCACCTGACATGATGGAGTTTGAAGCACTTTCGACCATGATGATGATGGAGGACTCGCCACCAATTAGAGATTCTGGTGGTGGTGGTGGTGCTGTGCAAGTTCAACCAATGGAGTGTTTGCTAGAGAACCCTGTTCCTCCCTTTCTGTCAAAAACTTTCGACCTTGTGAATGACCCATCACTGGATCCGATTATATCATGGAGCTCCACCGGTGGGAGCTTCATTGTGTGGGACCCTTTGGAGTTTGCAAGAATCGTCTTGCCAAGGAATTTCAAACACAACAATTTCTCCAGTTTTGTTCGCCAGCTCAATACTTATGGATTCCGCAAGATTGACACTGACAAATGGGAGTTTTTTAATGAAGCTTTCCAGCGTGGGAAGAAGCACTTACTGAAGAACATCCAAAGGCGAAGATCACCTCAATCCCAACAAGTTGGTAGCTACATTGGATCTTCCACTGATGCAGGAAAGCCTGGAGTTGAGGTTGAGATAGAAAGACTTAAGAAGGAGAGGAGTATGTTAATGCAAGAGGTGATTGATTTGCAGCAACAACAACGAAGAACGCTTCACCAAGCAGGAGAACTGAATCAAAGGCTCCAATCTGCAGAGAAGAGGGAGAAACAAATGGTTTCTTTCTTGGCCAAGTTACTTCAAAACCCTGACTTTATAGACCGCCTTAAGCATAAGAAGGAACAAAGAGATATAGATTCTCCAAGAGTGATAAGGAAGTTTGTCAAGCACCACCCACATGAAAAAGGAACAGAAGAAACTCTCATGTCTTATGAAACTCCAGAACTAAATCCAGTTTCCATTGAACAGTCTCCTCACTACCTTTCACAGGTTTTGGCTAGAGAAATGAGTGTAGGTGCAGAAAATCTGACTTCTCAAATTGAGAATATGGTATCAGATGAATTGGCTTCAGTGCATGGGATTATGTCAAATCCAGAAATTATTGGAGAAGGATCATCTAACTTGGGACTTGAAGATCCCCATTTCAAAGGGAAAAATGTCTTGATCCCAAATCAAGAAACTGTTCCAGAGTATTTTGTTTCCTTCCCAGATGACTTAACCAAGGAGAAAGGCTCTCCAGATTTTTCACCTCTTGGAACTGAAAGCTTTATGAAGCAAGAAGATATATGGGACCCCAACTTCAATGTTAGTGGTGCTACTTCAAGCTGTGTGAATGAGCTTTGGGGCAGTCCTATCAATTATGAAATGCCAGAATTTGGAGTCTCAAGTGCTATGTCAGACATATGGGATATGGGTAAGTGGCCAGCTGATGAATCTCCTTGA 1356 0.4248 MNNPNDENENSSMELGSEALFSPDMMEFEALSTMMMMEDSPPIRDSGGGGGAVQVQPMECLLENPVPPFLSKTFDLVNDPSLDPIISWSSTGGSFIVWDPLEFARIVLPRNFKHNNFSSFVRQLNTYGFRKIDTDKWEFFNEAFQRGKKHLLKNIQRRRSPQSQQVGSYIGSSTDAGKPGVEVEIERLKKERSMLMQEVIDLQQQQRRTLHQAGELNQRLQSAEKREKQMVSFLAKLLQNPDFIDRLKHKKEQRDIDSPRVIRKFVKHHPHEKGTEETLMSYETPELNPVSIEQSPHYLSQVLAREMSVGAENLTSQIENMVSDELASVHGIMSNPEIIGEGSSNLGLEDPHFKGKNVLIPNQETVPEYFVSFPDDLTKEKGSPDFSPLGTESFMKQEDIWDPNFNVSGATSSCVNELWGSPINYEMPEFGVSSAMSDIWDMGKWPADESP 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00011 451 SMART hsfneu3 65 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 Pfam HSF-type DNA-binding 69 158 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 56 289 IPR027725 -
Gabi2874g00011 451 FunFam Heat stress transcription factor B-4 62 159 - -
Gabi2874g00011 451 ProSitePatterns HSF-type DNA-binding domain signature. 108 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 Gene3D - 62 159 IPR036388 -
Gabi2874g00011 451 SUPERFAMILY "Winged helix" DNA-binding domain 65 158 IPR036390 -
Gabi2874g00011 451 PRINTS Heat shock factor (HSF) domain signature 107 119 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 PRINTS Heat shock factor (HSF) domain signature 120 132 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 PRINTS Heat shock factor (HSF) domain signature 69 92 IPR000232 GO:0003700|GO:0006355|GO:0043565
Gabi2874g00011 451 Coils Coil 185 205 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00011 Gabi-Chr2874 227158 229880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00011 48 434 HSF AT5G03720 44.192 1.72e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Gabi2874g00011 HSF_DNA-bind 1e-31 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00011 K09419 - gmx:100780835 561.222