Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00010 ATGGAAAAGAATTGCGTGAATGGCTGCCTATCATACTCAGACAAAATTCCCGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACTGTGTGCACTGATCTGCAGGAAAATGGCCGAATTCCATCAGTTGATACACTAAAGTCTGTGAATCCCTCCATTGATTCTTCACTTGAAATAGTTTTGGTGAATCGACACAGTGACCCCAGCTTAAGAGAACTGCAAAACAAAGTTCATAGCATTTCTTGTAGCAGCATAACGACAACAGAGGTTGTAGATCAACTTTCCAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATGAATTTGTTTCCATCTGGAGAGATTGCAGTAATGACCTGAAAGATTGCTTAGGGTCTGTTGTTGTTCCCATAGGTAGTCTATCCGTTGGCCTCTGCAGGCATCGTGCTATATTATTTAAAGTACTAGCCGACACCATTGATTTACCCTGTCGAATTGCAAAAGGTTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGCTTGATAGGGAATATCTTGTCGATTTAATTGGGAAGCCAGGTCACTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCTATCTCATTTTCTTCACCCTTGCGCTTTCCAAGCCTTAAACCAGCTGAACCTACCATTGATTTTGGGTCACTGGCCAGACAGTATTTCTCAGAATGTCTGTCTCTTGAGCTTGTCTTTGACAACAGTGCTGCAGAACAGTTTGATGGGAAGTGCAAGGACAGGAATAACCCTAGGCCAACTTCTAGTGACAGCAGCAGAAGTTCTCAGCTTCCTGTGCATCCACAAGTTTCTCATCCAAGCGCCCATGATCAAAGTTCTGAAACATATAAAGCATGTTACCCTCCTCAGAACACTGTAGACTCAACAAAGGTGGGCAAGTATCCACCGCCTTTAAAGCATAAGCGTCCTGTTGGTTTACAAACCCAATTAGCACTAACAAATTCCAATGATGACATTATCAAGAGTGGGAGGTTTGTTGAAGGAAACCAACTGATTCCTAGCAAACCTACTCGAGAGCTTACCTTTGACATGGAAGATTTGGACATACCGTGGTGTGACCTTGTTTTAAAAGAGAAAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAAGATTTTCATGCTGAACGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAACGTTTGCGGCATCCAAACATCGTTTTGTTGATGGGGGCTGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAAACCTGGTGCTAAAGAGCAGTTGGATGAGAGGCGTAGGCTTGGTATGGCTTACGATGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATTTACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTAAAGGCCAATACATTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCGAATGAGAAATCTGATGTTTACAGTTTTGGTGTAATCTTGTGGGAGCTTTCAACACTGCAACAGCCATGGGGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTAGCTGCAATAATTGAGGCTTGCTGGGCCAACGAGCCCTGGAAACGCCCTTCTTTTTTGAGTATTATGGATTCTTTGAGGCCATTGCTCAAAACTCCTACACCTCAACCTGGTCATCCAAACATGCAATTACTCACCTGA 1968 0.4334 MEKNCVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLQENGRIPSVDTLKSVNPSIDSSLEIVLVNRHSDPSLRELQNKVHSISCSSITTTEVVDQLSKLVCNRMGGSASVGEDEFVSIWRDCSNDLKDCLGSVVVPIGSLSVGLCRHRAILFKVLADTIDLPCRIAKGCKYCKRDDASSCLVRFGLDREYLVDLIGKPGHLCEPDSLVNGPSSISFSSPLRFPSLKPAEPTIDFGSLARQYFSECLSLELVFDNSAAEQFDGKCKDRNNPRPTSSDSSRSSQLPVHPQVSHPSAHDQSSETYKACYPPQNTVDSTKVGKYPPPLKHKRPVGLQTQLALTNSNDDIIKSGRFVEGNQLIPSKPTRELTFDMEDLDIPWCDLVLKEKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAKEQLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKFTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELSTLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVAAIIEACWANEPWKRPSFLSIMDSLRPLLKTPTPQPGHPNMQLLT 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00010 655 PRINTS Tyrosine kinase catalytic domain signature 543 553 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 PRINTS Tyrosine kinase catalytic domain signature 606 628 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 PRINTS Tyrosine kinase catalytic domain signature 455 468 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 PRINTS Tyrosine kinase catalytic domain signature 496 514 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 PRINTS Tyrosine kinase catalytic domain signature 562 584 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 87 640 - -
Gabi2874g00010 655 Pfam Protein tyrosine and serine/threonine kinase 382 635 IPR001245 GO:0004672|GO:0006468
Gabi2874g00010 655 FunFam Serine/threonine-protein kinase isoform 1 371 459 - -
Gabi2874g00010 655 Gene3D Transferase(Phosphotransferase) domain 1 460 646 - -
Gabi2874g00010 655 FunFam Serine/threonine-protein kinase CTR1 460 645 - -
Gabi2874g00010 655 Gene3D Phosphorylase Kinase; domain 1 374 459 - -
Gabi2874g00010 655 ProSitePatterns Protein kinases ATP-binding region signature. 387 408 IPR017441 GO:0005524
Gabi2874g00010 655 SMART serkin_6 381 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00010 655 ProSitePatterns Serine/Threonine protein kinases active-site signature. 502 514 IPR008271 GO:0004672|GO:0006468
Gabi2874g00010 655 MobiDBLite consensus disorder prediction 262 324 - -
Gabi2874g00010 655 CDD STKc_MAP3K-like 387 635 - -
Gabi2874g00010 655 SUPERFAMILY Protein kinase-like (PK-like) 356 634 IPR011009 -
Gabi2874g00010 655 Pfam Ethylene-responsive protein kinase Le-CTR1 6 203 - -
Gabi2874g00010 655 ProSiteProfiles Protein kinase domain profile. 381 639 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00010 655 MobiDBLite consensus disorder prediction 274 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00010 Gabi-Chr2874 212399 222958 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00010 6 651 MAP Kinase Kinase Kinase AT5G03730 68.934 0.0 879
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi2874g00010 PK_Tyr_Ser-Thr 5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00010 K14510 - gmx:100800648 1148.65