Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00009 ATGGAAATGCCTGCTAGAAGATCCAACTACTCGCTTCTCAGTCAAATTCCCGACGACCAGTTTGCCGGCGCCGCCGCTCCGTCGTCTTCGGGTGACGGAAAAACCAACCGAGGCGGCAAGTCCGACAGATGCTTCGATTGGGACCTAGTCGCCGATCACAGAGCTACTCAGCAGGGGAACAATCGGATCGGGAATTTGTACTCTTCGATCGGGTTGCAGAGGCAGTCCAGCGGGAGCAGCTACGGCGAAAGCTCGCTCTCCGGCGGCGGCGAGTATTATGCTCCGACGCTGTCTACGGCGGCGGCGAGTGAGGTCGATGCCTTTGGATACATGCATGACGAGGGATTCAAGATTGGCGAGGTTAAGAACAAGTTTACGGATGCTCCGACGTGGACCGGCGGGTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTACCAGTTGCAGCTCGCTCTGGCGCTGCGGCTTTCGTCGGATGCGACATGCGCCGATGATCCCAATTTCCTTGATCCGATGCCGGATGAATCCGCTCTGAGGCTGTCGTCGTCGAGTTCGGCGGAGGCGGTGTCTCATAGATTCTGGGTGAATGGCTGCCTATCATACTCAGACAAAATTCCCGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACTGTGTGCACTGATCTGCAGGAAAATGGCCGAATTCCATCAGTTGATACACTAAAGTCTGTGAATCCCTCCATTGATTCTTCACTTGAAATAGTTTTGGTGAATCGACACAGTGACCCCAGCTTAAGAGAACTGCAAAACAAAGTTCATAGCATTTCTTGTAGCAGCATAACGACAACAGAGGTTGTAGATCAACTTTCCAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATGAATTTGTTTCCATCTGGAGAGATTGCAGTAATGACCTGAAAGATTGCTTAGGGTCTGTTGTTGTTCCCATAGGTAGTCTATCCGTTGGCCTCTGCAGGCATCGTGCTATATTATTTAAAGTACTAGCCGACACCATTGATTTACCCTGTCGAATTGCAAAAGGTTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGCTTGATAGGGAATATCTTGTCGATTTAATTGGGAAGCCAGGTCACTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCTATCTCATTTTCTTCACCCTTGCGCTTTCCAAGCCTTAAACCAGCTGAACCTACCATTGATTTTGGGTCACTGGCCAGACAGTATTTCTCAGAATGTCTGTCTCTTGAGCTTGTCTTTGACAACAGTGCTGCAGAACAGTTTGATGGGAAGTGCAAGGACAGGAATAACCCTAGGCCAACTTCTAGTGACAGCAGCAGAAGTTCTCAGCTTCCTGTGCATCCACAAGTTTCTCATCCAAGCGCCCATGATCAAAGTTCTGAAACATATAAAGCATGTTACCCTCCTCAGAACACTGTAGACTCAACAAAGGTGGGCAAGTATCCACCGCCTTTAAAGCATAAGCGTCCTGTTGGTTTACAAACCCAATTAGCACTAACAAATTCCAATGATGACATTATCAAGAGTGGGAGGTTTGTTGAAGGAAACCAACTGATTCCTAGCAAACCTACTCGAGAGCTTACCTTTGACATGGAAGATTTGGACATACCGTGGTGTGACCTTGTTTTAAAAGAGAAAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAAGATTTTCATGCTGAACGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAACGTTTGCGGCATCCAAACATCGTTTTGTTGATGGGGGCTGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAAACCTGGTGCTAAAGAGCAGTTGGATGAGAGGCGTAGGCTTGGTATGGCTTACGATGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATTTACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTAAAGGCCAATACATTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCGAATGAGAAATCTGATGTTTACAGTTTTGGTGTAATCTTGTGGGAGCTTTCAACACTGCAACAGCCATGGGGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTAGCTGCAATAATTGAGGCTTGCTGGGCCAACGAGCCCTGGAAACGCCCTTCTTTTTTGAGTATTATGGATTCTTTGAGGCCATTGCTCAAAACTCCTACACCTCAACCTGGTCATCCAAACATGCAATTACTCACCTGA 2541 0.4699 MEMPARRSNYSLLSQIPDDQFAGAAAPSSSGDGKTNRGGKSDRCFDWDLVADHRATQQGNNRIGNLYSSIGLQRQSSGSSYGESSLSGGGEYYAPTLSTAAASEVDAFGYMHDEGFKIGEVKNKFTDAPTWTGGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPMPDESALRLSSSSSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLQENGRIPSVDTLKSVNPSIDSSLEIVLVNRHSDPSLRELQNKVHSISCSSITTTEVVDQLSKLVCNRMGGSASVGEDEFVSIWRDCSNDLKDCLGSVVVPIGSLSVGLCRHRAILFKVLADTIDLPCRIAKGCKYCKRDDASSCLVRFGLDREYLVDLIGKPGHLCEPDSLVNGPSSISFSSPLRFPSLKPAEPTIDFGSLARQYFSECLSLELVFDNSAAEQFDGKCKDRNNPRPTSSDSSRSSQLPVHPQVSHPSAHDQSSETYKACYPPQNTVDSTKVGKYPPPLKHKRPVGLQTQLALTNSNDDIIKSGRFVEGNQLIPSKPTRELTFDMEDLDIPWCDLVLKEKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAKEQLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKFTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELSTLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVAAIIEACWANEPWKRPSFLSIMDSLRPLLKTPTPQPGHPNMQLLT 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00009 846 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 163 831 - -
Gabi2874g00009 846 ProSitePatterns Serine/Threonine protein kinases active-site signature. 693 705 IPR008271 GO:0004672|GO:0006468
Gabi2874g00009 846 ProSitePatterns Protein kinases ATP-binding region signature. 578 599 IPR017441 GO:0005524
Gabi2874g00009 846 MobiDBLite consensus disorder prediction 453 515 - -
Gabi2874g00009 846 SUPERFAMILY Protein kinase-like (PK-like) 547 825 IPR011009 -
Gabi2874g00009 846 CDD STKc_MAP3K-like 578 826 - -
Gabi2874g00009 846 Pfam Protein tyrosine and serine/threonine kinase 573 826 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 Pfam Ethylene-responsive protein kinase Le-CTR1 188 394 - -
Gabi2874g00009 846 PRINTS Tyrosine kinase catalytic domain signature 646 659 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 PRINTS Tyrosine kinase catalytic domain signature 734 744 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 PRINTS Tyrosine kinase catalytic domain signature 687 705 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 PRINTS Tyrosine kinase catalytic domain signature 797 819 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 PRINTS Tyrosine kinase catalytic domain signature 753 775 IPR001245 GO:0004672|GO:0006468
Gabi2874g00009 846 FunFam Serine/threonine-protein kinase CTR1 651 836 - -
Gabi2874g00009 846 SMART serkin_6 572 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00009 846 ProSiteProfiles Protein kinase domain profile. 572 830 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00009 846 MobiDBLite consensus disorder prediction 465 508 - -
Gabi2874g00009 846 Gene3D Phosphorylase Kinase; domain 1 565 650 - -
Gabi2874g00009 846 Gene3D Transferase(Phosphotransferase) domain 1 651 837 - -
Gabi2874g00009 846 FunFam Serine/threonine-protein kinase isoform 1 562 650 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00009 Gabi-Chr2874 211738 222958 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00009 1 842 MAP Kinase Kinase Kinase AT5G03730 65.711 0.0 1013
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi2874g00009 PK_Tyr_Ser-Thr 8.4e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00009 K14510 - gmx:100800648 1401.34