Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00008 ATGGAAATGCCTGCTAGAAGATCCAACTACTCGCTTCTCAGTCAAATTCCCGACGACCAGTTTGCCGGCGCCGCCGCTCCGTCGTCTTCGGGTGACGGAAAAACCAACCGAGGCGGCAAGTCCGACAGATGCTTCGATTGGGACCTAGTCGCCGATCACAGAGCTACTCAGCAGGGGAACAATCGGATCGGGAATTTGTACTCTTCGATCGGGTTGCAGAGGCAGTCCAGCGGGAGCAGCTACGGCGAAAGCTCGCTCTCCGGCGGCGGCGAGTATTATGCTCCGACGCTGTCTACGGCGGCGGCGAGTGAGGTCGATGCCTTTGGATACATGCATGACGAGGGATTCAAGATTGGCGAGGTTAAGAACAAGTTTACGGATGCTCCGACGTGGACCGGCGGGTCCTCCGGGAAGAGCTGGGCGCAGCAGACGGAGGAGAGTTACCAGTTGCAGCTCGCTCTGGCGCTGCGGCTTTCGTCGGATGCGACATGCGCCGATGATCCCAATTTCCTTGATCCGATGCCGGATGAATCCGCTCTGAGGCTGTCGTCGTCGAGTTCGGCGGAGGCGGTGTCTCATAGATTCTGGGTGAATGGCTGCCTATCATACTCAGACAAAATTCCCGATGGCTTTTACCTAATTCATGGGATGGATTCCTATGTCTGGACTGTGTGCACTGATCTGCAGGAAAATGGCCGAATTCCATCAGTTGATACACTAAAGTCTGTGAATCCCTCCATTGATTCTTCACTTGAAATAGTTTTGGTGAATCGACACAGTGACCCCAGCTTAAGAGAACTGCAAAACAAAGTTCATAGCATTTCTTGTAGCAGCATAACGACAACAGAGGTTGTAGATCAACTTTCCAAGCTGGTTTGCAACCGTATGGGGGGTTCAGCTTCTGTTGGGGAAGATGAATTTGTTTCCATCTGGAGAGATTGCAGTAATGACCTGAAAGATTGCTTAGGGTCTGTTGTTGTTCCCATAGGTAGTCTATCCGTTGGCCTCTGCAGGCATCGTGCTATATTATTTAAAGTACTAGCCGACACCATTGATTTACCCTGTCGAATTGCAAAAGGTTGTAAATATTGCAAAAGGGATGATGCTTCATCTTGTCTTGTTCGATTTGGGCTTGATAGGGAATATCTTGTCGATTTAATTGGGAAGCCAGGTCACTTATGCGAGCCTGATTCCTTGGTCAATGGTCCATCTTCTATCTCATTTTCTTCACCCTTGCGCTTTCCAAGCCTTAAACCAGCTGAACCTACCATTGATTTTGGGTCACTGGCCAGACAGTATTTCTCAGAATGTCTGTCTCTTGAGCTTGTCTTTGACAACAGTGCTGCAGGATTCTCCATTTCAGAACAGTTTGATGGGAAGTGCAAGGACAGGAATAACCCTAGGCCAACTTCTAGTGACAGCAGCAGAAGTTCTCAGCTTCCTGTGCATCCACAAGTTTCTCATCCAAGCGCCCATGATCAAAGTTCTGAAACATATAAAGCATGTTACCCTCCTCAGAACACTGTAGACTCAACAAAGGTGGGCAAGTATCCACCGCCTTTAAAGCATAAGCGTCCTGTTGGTTTACAAACCCAATTAGCACTAACAAATTCCAATGATGACATTATCAAGAGTGGGAGGTTTGTTGAAGGAAACCAACTGATTCCTAGCAAACCTACTCGAGAGCTTACCTTTGACATGGAAGATTTGGACATACCGTGGTGTGACCTTGTTTTAAAAGAGAAAATAGGATCAGGTTCTTTTGGAACTGTACATCGTGCTGAGTGGAATGGCTCGGATGTTGCTGTGAAAATTTTGATGGAACAAGATTTTCATGCTGAACGCTTCAAGGAATTCCTGAGGGAGGTTGCAATAATGAAACGTTTGCGGCATCCAAACATCGTTTTGTTGATGGGGGCTGTCACTCAGCCTCCTAACTTATCAATTGTCACAGAATATTTATCAAGGGGTAGCTTATATAGGCTGTTGCATAAACCTGGTGCTAAAGAGCAGTTGGATGAGAGGCGTAGGCTTGGTATGGCTTACGATGTGGCAAAGGGGATGAATTATCTTCATAAACGTAATCCTCCCATTGTTCATAGAGATCTGAAATCTCCAAACCTTCTTGTTGACAAGAAATTTACAGTGAAGGTTTGTGATTTTGGGCTTTCCCGTCTAAAGGCCAATACATTTCTCTCATCCAAGTCAGCTGCTGGGACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGATGAGCCATCGAATGAGAAATCTGATGTTTACAGTTTTGGTGTAATCTTGTGGGAGCTTTCAACACTGCAACAGCCATGGGGTAATTTGAATCCAGCACAGGTTGTGGCAGCTGTTGGCTTTAAGGGAAAAAGGCTTGAGATCCCACGTGATTTAAATCCTCAAGTAGCTGCAATAATTGAGGCTTGCTGGGCCAACGAGCCCTGGAAACGCCCTTCTTTTTTGAGTATTATGGATTCTTTGAGGCCATTGCTCAAAACTCCTACACCTCAACCTGGTCATCCAAACATGCAATTACTCACCTGA 2556 0.4695 MEMPARRSNYSLLSQIPDDQFAGAAAPSSSGDGKTNRGGKSDRCFDWDLVADHRATQQGNNRIGNLYSSIGLQRQSSGSSYGESSLSGGGEYYAPTLSTAAASEVDAFGYMHDEGFKIGEVKNKFTDAPTWTGGSSGKSWAQQTEESYQLQLALALRLSSDATCADDPNFLDPMPDESALRLSSSSSAEAVSHRFWVNGCLSYSDKIPDGFYLIHGMDSYVWTVCTDLQENGRIPSVDTLKSVNPSIDSSLEIVLVNRHSDPSLRELQNKVHSISCSSITTTEVVDQLSKLVCNRMGGSASVGEDEFVSIWRDCSNDLKDCLGSVVVPIGSLSVGLCRHRAILFKVLADTIDLPCRIAKGCKYCKRDDASSCLVRFGLDREYLVDLIGKPGHLCEPDSLVNGPSSISFSSPLRFPSLKPAEPTIDFGSLARQYFSECLSLELVFDNSAAGFSISEQFDGKCKDRNNPRPTSSDSSRSSQLPVHPQVSHPSAHDQSSETYKACYPPQNTVDSTKVGKYPPPLKHKRPVGLQTQLALTNSNDDIIKSGRFVEGNQLIPSKPTRELTFDMEDLDIPWCDLVLKEKIGSGSFGTVHRAEWNGSDVAVKILMEQDFHAERFKEFLREVAIMKRLRHPNIVLLMGAVTQPPNLSIVTEYLSRGSLYRLLHKPGAKEQLDERRRLGMAYDVAKGMNYLHKRNPPIVHRDLKSPNLLVDKKFTVKVCDFGLSRLKANTFLSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELSTLQQPWGNLNPAQVVAAVGFKGKRLEIPRDLNPQVAAIIEACWANEPWKRPSFLSIMDSLRPLLKTPTPQPGHPNMQLLT 851
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00008 851 MobiDBLite consensus disorder prediction 470 513 - -
Gabi2874g00008 851 CDD STKc_MAP3K-like 583 831 - -
Gabi2874g00008 851 PRINTS Tyrosine kinase catalytic domain signature 739 749 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 PRINTS Tyrosine kinase catalytic domain signature 651 664 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 PRINTS Tyrosine kinase catalytic domain signature 692 710 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 PRINTS Tyrosine kinase catalytic domain signature 758 780 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 PRINTS Tyrosine kinase catalytic domain signature 802 824 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 Pfam Protein tyrosine and serine/threonine kinase 578 831 IPR001245 GO:0004672|GO:0006468
Gabi2874g00008 851 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 163 836 - -
Gabi2874g00008 851 Pfam Ethylene-responsive protein kinase Le-CTR1 188 394 - -
Gabi2874g00008 851 Gene3D Transferase(Phosphotransferase) domain 1 656 842 - -
Gabi2874g00008 851 SUPERFAMILY Protein kinase-like (PK-like) 552 830 IPR011009 -
Gabi2874g00008 851 SMART serkin_6 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00008 851 Gene3D Phosphorylase Kinase; domain 1 570 655 - -
Gabi2874g00008 851 ProSitePatterns Protein kinases ATP-binding region signature. 583 604 IPR017441 GO:0005524
Gabi2874g00008 851 ProSitePatterns Serine/Threonine protein kinases active-site signature. 698 710 IPR008271 GO:0004672|GO:0006468
Gabi2874g00008 851 ProSiteProfiles Protein kinase domain profile. 577 835 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2874g00008 851 FunFam Serine/threonine-protein kinase CTR1 656 841 - -
Gabi2874g00008 851 FunFam Serine/threonine-protein kinase isoform 1 567 655 - -
Gabi2874g00008 851 MobiDBLite consensus disorder prediction 458 525 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00008 Gabi-Chr2874 211738 222958 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00008 1 847 MAP Kinase Kinase Kinase AT5G03730 65.336 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL_CTR1-DRK-2 Gabi2874g00008 PK_Tyr_Ser-Thr 8.5e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00008 K14510 - gmx:100800648 1395.18