LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2874g00002	ATGGAAGAAACTGTGACCAGTGCTGTTCCTGCAGGGTCATCATATACACCACCCACACAACAAGTTGTTATCACCTCAGTGCCTCAGGTTATGAACATGAACGTGGGGATTACTGCAGGGACAGCAACTGTTCCTGCTGTCTCAACAACTGCAATAACACCAACAACAACAACACCTGCAACGGGGTTTGATTTGTTTGGTAAAAAGAAGAGAGGGAGGCCAAGAAAATATGACTCAGAAGGGAACCTAACATTAACATACCAAAAGAAGAGTGCAACAACTCCAACAACTCCAACGAGTTTCACTTTGTCACCAACTTCCCCTTCTGAGTTTTCCAACAAAAGGGGTCGTGGCAGACCATCTGGGTCTGGTAACTGGCAACTCCTTGCTTCTTTTGGTGAGGTGTTTGCAAGCACGGCTGGTGGGGATTTTACACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCTTGTTATTTGCCCAGAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCTATCTCTAATGTCACCATCCGCCAACCTGGTTCTTCTGGTGGCATATTGACTTATGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACACTCTCTGACAGTAATGGCATAAAAAGTCGAACTGGGGGATTGAGTGTCTCACTAGCTGGCCCTGACGGTAGAGTGATAGGAGGTGGTGTTGCTGGTCTTTTGACAGCTGCTGGCCCTATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTTACAAGACCCATAAAAGGAAGTACCAACGTGAACATGCAGTGGCTTCCCCTACTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGACCAATCGCACAAGCTAATCTTGATGGTGAAAACATTCTGATACCTGTGTCTCAGTTACCAGATCAAAGCCAGAGAGAACCTGTCAGTGTTACAAGTGATAAACAGAACCTAGATGCTACACCTAATGCTGCTACTTGGAATGGTTCTGAAGAGTTTTCAGATCAGAGGATTTCCCCTGACATCAATATATCTTTGCCTGATGAGTAA	1083	0.4534	MEETVTSAVPAGSSYTPPTQQVVITSVPQVMNMNVGITAGTATVPAVSTTAITPTTTTPATGFDLFGKKKRGRPRKYDSEGNLTLTYQKKSATTPTTPTSFTLSPTSPSEFSNKRGRGRPSGSGNWQLLASFGEVFASTAGGDFTPHVVTVYTGEDVAGKILLFAQKSPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTLSDSNGIKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGYKTHKRKYQREHAVASPTSAGPDTVTAARPIAQANLDGENILIPVSQLPDQSQREPVSVTSDKQNLDATPNAATWNGSEEFSDQRISPDINISLPDE	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2874g00002	360	MobiDBLite	consensus disorder prediction	309	360	-	-
	Gabi2874g00002	360	Pfam	AT hook motif	114	123	IPR017956	GO:0003677
	Gabi2874g00002	360	Pfam	AT hook motif	68	78	IPR017956	GO:0003677
	Gabi2874g00002	360	SUPERFAMILY	AF0104/ALDC/Ptd012-like	143	266	-	-
	Gabi2874g00002	360	PANTHER	AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9	44	326	IPR039605	GO:0003680
	Gabi2874g00002	360	ProSiteProfiles	PPC domain profile profile.	141	283	IPR005175	-
	Gabi2874g00002	360	CDD	DUF296	145	259	IPR005175	-
	Gabi2874g00002	360	MobiDBLite	consensus disorder prediction	309	352	-	-
	Gabi2874g00002	360	MobiDBLite	consensus disorder prediction	89	123	-	-
	Gabi2874g00002	360	Pfam	Plants and Prokaryotes Conserved (PCC) domain	146	259	IPR005175	-
	Gabi2874g00002	360	SMART	AT_hook_2	114	126	IPR017956	GO:0003677
	Gabi2874g00002	360	SMART	AT_hook_2	68	80	IPR017956	GO:0003677
	Gabi2874g00002	360	Gene3D	-	146	278	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2874g00002	Gabi-Chr2874	44059	48562	Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2874g00002	68	328	AT-hook Motif Nuclear Localized (AHL) Family	AT4G12080	47.584	8.84e-68	215