Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2874g00002 ATGGAAGAAACTGTGACCAGTGCTGTTCCTGCAGGGTCATCATATACACCACCCACACAACAAGTTGTTATCACCTCAGTGCCTCAGGTTATGAACATGAACGTGGGGATTACTGCAGGGACAGCAACTGTTCCTGCTGTCTCAACAACTGCAATAACACCAACAACAACAACACCTGCAACGGGGTTTGATTTGTTTGGTAAAAAGAAGAGAGGGAGGCCAAGAAAATATGACTCAGAAGGGAACCTAACATTAACATACCAAAAGAAGAGTGCAACAACTCCAACAACTCCAACGAGTTTCACTTTGTCACCAACTTCCCCTTCTGAGTTTTCCAACAAAAGGGGTCGTGGCAGACCATCTGGGTCTGGTAACTGGCAACTCCTTGCTTCTTTTGGTGAGGTGTTTGCAAGCACGGCTGGTGGGGATTTTACACCGCATGTGGTGACTGTTTATACTGGAGAGGATGTTGCTGGAAAGATCTTGTTATTTGCCCAGAAGAGTCCAAGAGGAATATGCATTCTTTCTGCCAATGGAGCTATCTCTAATGTCACCATCCGCCAACCTGGTTCTTCTGGTGGCATATTGACTTATGAGGGTCGATTTGAGATTTTATCTTTGTCTGGATCATTCACACTCTCTGACAGTAATGGCATAAAAAGTCGAACTGGGGGATTGAGTGTCTCACTAGCTGGCCCTGACGGTAGAGTGATAGGAGGTGGTGTTGCTGGTCTTTTGACAGCTGCTGGCCCTATCCAAATTGTAGTGGGAAGCTTCATGCCAAATGGTTACAAGACCCATAAAAGGAAGTACCAACGTGAACATGCAGTGGCTTCCCCTACTTCAGCTGGTCCAGATACAGTGACAGCAGCAAGACCAATCGCACAAGCTAATCTTGATGGTGAAAACATTCTGATACCTGTGTCTCAGTTACCAGATCAAAGCCAGAGAGAACCTGTCAGTGTTACAAGTGATAAACAGAACCTAGATGCTACACCTAATGCTGCTACTTGGAATGGTTCTGAAGAGTTTTCAGATCAGAGGATTTCCCCTGACATCAATATATCTTTGCCTGATGAGTAA 1083 0.4534 MEETVTSAVPAGSSYTPPTQQVVITSVPQVMNMNVGITAGTATVPAVSTTAITPTTTTPATGFDLFGKKKRGRPRKYDSEGNLTLTYQKKSATTPTTPTSFTLSPTSPSEFSNKRGRGRPSGSGNWQLLASFGEVFASTAGGDFTPHVVTVYTGEDVAGKILLFAQKSPRGICILSANGAISNVTIRQPGSSGGILTYEGRFEILSLSGSFTLSDSNGIKSRTGGLSVSLAGPDGRVIGGGVAGLLTAAGPIQIVVGSFMPNGYKTHKRKYQREHAVASPTSAGPDTVTAARPIAQANLDGENILIPVSQLPDQSQREPVSVTSDKQNLDATPNAATWNGSEEFSDQRISPDINISLPDE 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2874g00002 360 MobiDBLite consensus disorder prediction 309 360 - -
Gabi2874g00002 360 Pfam AT hook motif 114 123 IPR017956 GO:0003677
Gabi2874g00002 360 Pfam AT hook motif 68 78 IPR017956 GO:0003677
Gabi2874g00002 360 SUPERFAMILY AF0104/ALDC/Ptd012-like 143 266 - -
Gabi2874g00002 360 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 326 IPR039605 GO:0003680
Gabi2874g00002 360 ProSiteProfiles PPC domain profile profile. 141 283 IPR005175 -
Gabi2874g00002 360 CDD DUF296 145 259 IPR005175 -
Gabi2874g00002 360 MobiDBLite consensus disorder prediction 309 352 - -
Gabi2874g00002 360 MobiDBLite consensus disorder prediction 89 123 - -
Gabi2874g00002 360 Pfam Plants and Prokaryotes Conserved (PCC) domain 146 259 IPR005175 -
Gabi2874g00002 360 SMART AT_hook_2 114 126 IPR017956 GO:0003677
Gabi2874g00002 360 SMART AT_hook_2 68 80 IPR017956 GO:0003677
Gabi2874g00002 360 Gene3D - 146 278 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2874g00002 Gabi-Chr2874 44059 48562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2874g00002 68 328 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 47.584 8.84e-68 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2874g00002 - - gmx:100779227 450.669