Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2873g00004 ATGGATAATTATGGGTCATCTTCTTCTCCATATCGTTATCCAAACCCATATGTGTACCCTCCTAACCCTCATCCACCATACCAGCCTATAGCTCCAGGTCCTGATCCATATGCACATGTTCCTTATGCATATCCTTATAGTTCTTCACATTCCTTCAACTATTCCTACCCTAGATCACCCTTATCATCCTCCAATTCTGGTTCATTCAAGTATTCTTACCCTCCTCCTCCTCCTCAATCACCCTCCTCAGCCCCATTTAACCACCCTCCTCCTCCCCAATTGGACTTTCCCCAGCCTCTTCCAGCTTATCCTTATCCCTACCATGTTCCTCCTCAAGGGACTCATGGTTCTCCTAGGCCTTCCCTTTCAAACCATGGTAGTTTTCAACATGGTTCATCTCATCACTATTATCAACAAAATGAGGCCTATTCTTCTCATGGAGACCCTCCTGATGCGCATTTGCGTGCCAATAGCTTCTCTGGCCCTTACTGGCAGGAGACAACAAGCTCCACAGGTGGAGTAGCAGCACAAAGTAGTGATAATTCCAAGCCTTCTAAGAGTTCTGCTTACCCTCCTTTGGATGATCTTATGAGCAGTGTTCGGTTGTCTGATAACATGCCAACTGCTCCTGCATCACCCCTTGCACCTGCAGCGCAACCACTGATGTATTCCATTTCAGTTCCAAAGTTACAGCAGAAGAGAGAGGACTTTTATGGATATTCAAATAACTCCTTTTCGGGTTGGGGATCCTCCTACCCTGGTCAGGTGGATTCATCTAGGCTTTCAGATTATTCAGGCTCATTTAATAATTCAGTGCATGGCCAGAGAATGCAGATTGTTCCAATACAGAATAAAGGATCCTTGAGAGTTTTGCTCCTACATGGGAATTTAGATATATGGGTTCATGAAGCCAAAAATCTCCCAAATATGGACATGTTCCACAAAACATTGGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATCGAAGGAACTATGAATAGGAAGATTACCAGTGATCCTTATGTAACAATTTCAGTATCAAATGCTGTACTTGGGAGGACTTTTGTCATTAGCAACTGTGAAAATCCTGTCTGGATTCAACATTTCTATGTTCCCGTTGCACATCATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTGGTGGGTTCACAACTCATTGGCATTGTGGCAATTCCAGTTGAACAAATATACTCAGGGGAAAAAGTTGAAGGAACATTTCCTATCCTGAATAATAATGGGAAACCTTGTAAGCAAGGTGCTGTCCTGAGCCTATCCATTCAATTCATCCCAATGGAGCAACTGAGCATTTATCACCAAGGAGTGGGAGCAGGACCTGAATATATTGGGGTTCCTGGTACATATTTTCCTTTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATATTCCAGATGGAAGCCTCCCCAATGTGTTGCTTGACAATGGGTTGTATTATGTCCATGGACAGTGTTGGATTGACATCTTTGATGCCATAAGACAAGCTCAGCGTTTGATTTACATTACAGGGTGGTCAGTGTGGCACAAAGTTAGGTTGATAAGGGATGCTTCTGATAATGCATCAGATTATAACTTGGGTGATCTTCTGAGGTCAAAGTCACAAGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCTACGTCAAGAAGCATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGAAGATTTTTCAAGCATTCTTCAGTACATGTGCTGCTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACGCATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCATTTGTCGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTCTTTAGGACATTGCAGACAATACATAAAGATGACTATCACAACCCTACTTTCACGGGTAATATTGGTGGTTGTCCAAGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCATGGTATAAAAAAGTTGAAAATTTCATATGATGATGCTTTGCTTAGGCTGGAAAGAATTCCAGATGTTATTGGCATGAATGATGCTCATTATGTTGGTGATGATGATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCGAATTCTGTTAAGGGATTTCCAAAGAATCCAAAAGAAGCAACTAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCTGCACAGCATTATATTTATATAGAGAATCAATATTTCATCGGGTCTTCATTCAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATAAAAGCAAATGAGAGATTCGCTGTGTATATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACACAAAGGATTTTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATATACAAGGCTTTGGTTGAGGTCGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGAGAGGTCATAAATATGCATGACAATTTCAATGTGTCAGGATCTCCTCCCCCAGCAAATAGTCCACAAGCAGCTAGTCGAAATAGCCGGCGTTTCATGATTTATGTTCATTCAAAAGGAATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAATATCAACCAACGCTCTATGGAAGGCACGAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACTTGGGCAAGAAAGCAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACACACAGGAACCATTGAAGACTGCTTCTTGCAACCTGAGAGCCTTGAATGTGTGCGAAGGGTTAGAGCAATGGGTGAGGTTAACTGGAACCAATTTTCAGCAAATGATATAACAGAGATGAGAGGGCATCTACTCAAATACCCAGTAGAAGTTGATCGGAAAGGCAAAGTTAGATCCCTTCCTGGCCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCATTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3333 0.417 MDNYGSSSSPYRYPNPYVYPPNPHPPYQPIAPGPDPYAHVPYAYPYSSSHSFNYSYPRSPLSSSNSGSFKYSYPPPPPQSPSSAPFNHPPPPQLDFPQPLPAYPYPYHVPPQGTHGSPRPSLSNHGSFQHGSSHHYYQQNEAYSSHGDPPDAHLRANSFSGPYWQETTSSTGGVAAQSSDNSKPSKSSAYPPLDDLMSSVRLSDNMPTAPASPLAPAAQPLMYSISVPKLQQKREDFYGYSNNSFSGWGSSYPGQVDSSRLSDYSGSFNNSVHGQRMQIVPIQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMNRKITSDPYVTISVSNAVLGRTFVISNCENPVWIQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVEGTFPILNNNGKPCKQGAVLSLSIQFIPMEQLSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHIPDGSLPNVLLDNGLYYVHGQCWIDIFDAIRQAQRLIYITGWSVWHKVRLIRDASDNASDYNLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTIHKDDYHNPTFTGNIGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGMNDAHYVGDDDPEAWHVQIFRSIDSNSVKGFPKNPKEATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREVINMHDNFNVSGSPPPANSPQAASRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRAMGEVNWNQFSANDITEMRGHLLKYPVEVDRKGKVRSLPGQEEFPDVGGKIVGSFLAMKENLTI 1110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2873g00004 1110 MobiDBLite consensus disorder prediction 55 70 - -
Gabi2873g00004 1110 MobiDBLite consensus disorder prediction 55 215 - -
Gabi2873g00004 1110 MobiDBLite consensus disorder prediction 71 113 - -
Gabi2873g00004 1110 MobiDBLite consensus disorder prediction 160 188 - -
Gabi2873g00004 1110 ProSiteProfiles C2 domain profile. 273 419 IPR000008 -
Gabi2873g00004 1110 Gene3D Endonuclease Chain A 500 735 - -
Gabi2873g00004 1110 SMART pld_4 956 983 IPR001736 GO:0003824
Gabi2873g00004 1110 SMART pld_4 621 656 IPR001736 GO:0003824
Gabi2873g00004 1110 SMART C2_3c 296 418 IPR000008 -
Gabi2873g00004 1110 FunFam Phospholipase D 769 1002 - -
Gabi2873g00004 1110 Pfam Phospholipase D C terminal 1030 1100 IPR024632 -
Gabi2873g00004 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 956 983 IPR001736 GO:0003824
Gabi2873g00004 1110 FunFam Phospholipase D delta 290 437 - -
Gabi2873g00004 1110 SUPERFAMILY Phospholipase D/nuclease 492 721 - -
Gabi2873g00004 1110 FunFam Phospholipase D delta 496 735 - -
Gabi2873g00004 1110 PANTHER PHOSPHOLIPASE D 285 1101 IPR015679 -
Gabi2873g00004 1110 Pfam C2 domain 295 421 IPR000008 -
Gabi2873g00004 1110 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 293 443 IPR035892 -
Gabi2873g00004 1110 SUPERFAMILY Phospholipase D/nuclease 790 1042 - -
Gabi2873g00004 1110 Gene3D C2 domain 290 435 IPR035892 -
Gabi2873g00004 1110 CDD C2_plant_PLD 290 442 - -
Gabi2873g00004 1110 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 621 656 IPR001736 GO:0003824
Gabi2873g00004 1110 Pfam Phospholipase D Active site motif 957 983 IPR001736 GO:0003824
Gabi2873g00004 1110 Pfam Phospholipase D Active site motif 622 656 IPR001736 GO:0003824
Gabi2873g00004 1110 Gene3D Endonuclease Chain A 766 1011 - -
Gabi2873g00004 1110 MobiDBLite consensus disorder prediction 116 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2873g00004 Gabi-Chr2873 21194 30050 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2873g00004 18 1110 Phospholipase D Gene Family (Wang group) AT2G42010 66.490 0.0 1455
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2873g00004 K01115 - gmx:100791059 1868.59