Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2873g00002 ATGGATAATTATGGGTCATCTTCTTCTCCATATCGTTATCCAAACCCATATGTGTACCCTCCTAACCCTCATCCACCATACCAGCCTATAGCTCCAGGTCCTGATCCATATGCACATGTTCCTTATGCATATCCTTATAGTTCTTCACATTCCTTCAACTATTCCTACCCTAGATCACCCTTATCATCCTCCAATTCTGGTTCATTCAAGTATTCTTACCCTCCTCCTCCTCCTCAATCACCCTCCTCAGCCCCATTTAACCACCCTCCTCCTCCCCAATTGGACTTTCCCCAGCCTCTTCCAGCTTATCCTTATCCCTACCATGTTCCTCCTCAAGGGACTCATGGTTCTCCTAGGCCTTCCCTTTCAAACCATGGTAGTTTTCAACATGGTTCATCTCATCACTATTATCAACAAAATGAGGCCTATTCTTCTCATGGAGACCCTCCTGATGCGCATTTGCGTGCCAATAGCTTCTCTGGCCCTTACTGGCAGGAGACAACAAGCTCCACAGGTGGAGTAGCAGCACAAAGTAGTGATAATTCCAAGCCTTCTAAGAGTTCTGCTTACCCTCCTTTGGATGATCTTATGAGCAGTGTTCGGTTGTCTGATAACATGCCAACTGCTCCTGCATCACCCCTTGCACCTGCAGCGCAACCACTGATGTATTCCATTTCAGTTCCAAAGTTACAGCAGAAGAGAGAGGACTTTTATGGATATTCAAATAACTCCTTTTCGGGTTGGGGATCCTCCTACCCTGGTCAGGTGGATTCATCTAGGCTTTCAGATTATTCAGGCTCATTTAATAATTCAGTGCATGGCCAGAGAATGCAGATTGTTCCAATACAGAATAAAGGATCCTTGAGAGTTTTGCTCCTACATGGGAATTTAGATATATGGGTTCATGAAGCCAAAAATCTCCCAAATATGGACATGTTCCACAAAACATTGGGGGATATGTTTGGTAAATTACCTGGTAGTGTGAGCAATAAAATCGAAGGAACTATGAATAGGAAGATTACCAGTGATCCTTATGTAACAATTTCAGTATCAAATGCTGTACTTGGGAGGACTTTTGTCATTAGCAACTGTGAAAATCCTGTCTGGATTCAACATTTCTATGTTCCCGTTGCACATCATGCTGCTGAAGTGCACTTTGTTGTTAAAGACAGTGATGTGGTGGGTTCACAACTCATTGGCATTGTGGCAATTCCAGTTGAACAAATATACTCAGGGGAAAAAGTTGAAGGAACATTTCCTATCCTGAATAATAATGGGAAACCTTGTAAGCAAGGTGCTGTCCTGAGCCTATCCATTCAATTCATCCCAATGGAGCAACTGAGCATTTATCACCAAGGAGTGGGAGCAGGACCTGAATATATTGGGGTTCCTGGTACATATTTTCCTTTGAGGAAAGGTGGAACTGTTACTCTATATCAAGATGCTCATATTCCAGATGGAAGCCTCCCCAATGTGTTGCTTGACAATGGGTTGTATTATGTCCATGGACAGTGTTGGATTGACATCTTTGATGCCATAAGACAAGCTCAGCGTTTGATTTACATTACAGGGTGGTCAGTGTGGCACAAAGTTAGGTTGATAAGGGATGCTTCTGATAATGCATCAGATTATAACTTGGGTGATCTTCTGAGGTCAAAGTCACAAGAAGGAGTAAGAGTGCTTCTCCTTATTTGGGATGATCCTACGTCAAGAAGCATTTTGGGTTATAAAACAGATGGTGTCATGGCAACTCATGATGAGGAAACTCGAAGATTTTTCAAGCATTCTTCAGTACATGTGCTGCTTTGTCCTCGCATTGCTGGAAAACGACATAGCTGGATCAAGCAAAAGGAAGTTGGAACAATATATACGCATCATCAGAAAACTGTAATTGTGGATGCTGATGCTGGAAATAACAGAAGAAAAATTGTAGCATTTGTCGGTGGACTTGATTTGTGTGATGGGCGATATGATACTCCCCACCATCCTCTCTTTAGGACATTGCAGACAATACATAAAGATGACTATCACAACCCTACTTTCACGGGTAATATTGGTGGTTGTCCAAGGGAGCCATGGCATGATTTGCATTCTAAAATTGATGGTCCAGCAGCTTATGATGTTTTAACTAACTTTGAGGAGCGCTGGTTAAAAGCTTCAAAACCTCATGGTATAAAAAAGTTGAAAATTTCATATGATGATGCTTTGCTTAGGCTGGAAAGAATTCCAGATGTTATTGGCATGAATGATGCTCATTATGTTGGTGATGATGATCCTGAAGCTTGGCATGTTCAGATATTTCGTTCAATTGATTCGAATTCTGTTAAGGGATTTCCAAAGAATCCAAAAGAAGCAACTAGCAAGAACCTAGTATGTGGGAAGAATGTGCTGATTGACATGAGCATACATACAGCATATGTGAAGGCCATTCGTGCTGCACAGCATTATATTTATATAGAGAATCAATATTTCATCGGGTCTTCATTCAATTGGAGTCAACATAAAGACCTTGGTGCTAATAATTTAATCCCAATGGAAATTGCTCTAAAGATTGCTGAAAAGATAAAAGCAAATGAGAGATTCGCTGTGTATATTGTTATTCCAATGTGGCCAGAGGGTGTTCCAACAGGGGCTGCCACACAAAGGATTTTATTTTGGCAGAATAAAACAATGCAAATGATGTATGAGACAATATACAAGGCTTTGGTTGAGGTCGGGCTTGAAGCAGCATTCTCTCCACAAGACTATTTGAACTTTTTCTGTCTTGGCAATCGAGAGGTCATAAATATGCATGACAATTTCAATGTGTCAGGATCTCCTCCCCCAGCAAATAGTCCACAAGTATTGCTCTATCCAACTAGTCGAAATAGCCGGCGTTTCATGATTTATGTTCATTCAAAAGGAATGATAGTTGATGATGAATATGTGATATTGGGGTCTGCAAATATCAACCAACGCTCTATGGAAGGCACGAGGGACAGTGAGATTGCAATGGGAGCCTACCAACCTCATCATACTTGGGCAAGAAAGCAATCTTATCCACATGGACAAATCCATGGATATAGGATGTCACTTTGGGCAGAACACACAGGAACCATTGAAGACTGCTTCTTGCAACCTGAGAGCCTTGAATGTGTGCGAAGGGTTAGAGCAATGGGTGAGGTTAACTGGAACCAATTTTCAGCAAATGATATAACAGAGATGAGAGGGCATCTACTCAAATACCCAGTAGAAGTTGATCGGAAAGGCAAAGTTAGATCCCTTCCTGGCCAAGAAGAGTTCCCTGATGTGGGAGGAAAAATAGTTGGATCATTTCTTGCCATGAAGGAGAATCTAACCATTTGA 3345 0.4164 MDNYGSSSSPYRYPNPYVYPPNPHPPYQPIAPGPDPYAHVPYAYPYSSSHSFNYSYPRSPLSSSNSGSFKYSYPPPPPQSPSSAPFNHPPPPQLDFPQPLPAYPYPYHVPPQGTHGSPRPSLSNHGSFQHGSSHHYYQQNEAYSSHGDPPDAHLRANSFSGPYWQETTSSTGGVAAQSSDNSKPSKSSAYPPLDDLMSSVRLSDNMPTAPASPLAPAAQPLMYSISVPKLQQKREDFYGYSNNSFSGWGSSYPGQVDSSRLSDYSGSFNNSVHGQRMQIVPIQNKGSLRVLLLHGNLDIWVHEAKNLPNMDMFHKTLGDMFGKLPGSVSNKIEGTMNRKITSDPYVTISVSNAVLGRTFVISNCENPVWIQHFYVPVAHHAAEVHFVVKDSDVVGSQLIGIVAIPVEQIYSGEKVEGTFPILNNNGKPCKQGAVLSLSIQFIPMEQLSIYHQGVGAGPEYIGVPGTYFPLRKGGTVTLYQDAHIPDGSLPNVLLDNGLYYVHGQCWIDIFDAIRQAQRLIYITGWSVWHKVRLIRDASDNASDYNLGDLLRSKSQEGVRVLLLIWDDPTSRSILGYKTDGVMATHDEETRRFFKHSSVHVLLCPRIAGKRHSWIKQKEVGTIYTHHQKTVIVDADAGNNRRKIVAFVGGLDLCDGRYDTPHHPLFRTLQTIHKDDYHNPTFTGNIGGCPREPWHDLHSKIDGPAAYDVLTNFEERWLKASKPHGIKKLKISYDDALLRLERIPDVIGMNDAHYVGDDDPEAWHVQIFRSIDSNSVKGFPKNPKEATSKNLVCGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWSQHKDLGANNLIPMEIALKIAEKIKANERFAVYIVIPMWPEGVPTGAATQRILFWQNKTMQMMYETIYKALVEVGLEAAFSPQDYLNFFCLGNREVINMHDNFNVSGSPPPANSPQVLLYPTSRNSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDSEIAMGAYQPHHTWARKQSYPHGQIHGYRMSLWAEHTGTIEDCFLQPESLECVRRVRAMGEVNWNQFSANDITEMRGHLLKYPVEVDRKGKVRSLPGQEEFPDVGGKIVGSFLAMKENLTI 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2873g00002 1114 MobiDBLite consensus disorder prediction 55 70 - -
Gabi2873g00002 1114 MobiDBLite consensus disorder prediction 55 215 - -
Gabi2873g00002 1114 MobiDBLite consensus disorder prediction 71 113 - -
Gabi2873g00002 1114 Gene3D Endonuclease Chain A 766 1015 - -
Gabi2873g00002 1114 Pfam Phospholipase D C terminal 1034 1104 IPR024632 -
Gabi2873g00002 1114 MobiDBLite consensus disorder prediction 160 188 - -
Gabi2873g00002 1114 ProSiteProfiles C2 domain profile. 273 419 IPR000008 -
Gabi2873g00002 1114 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 960 987 IPR001736 GO:0003824
Gabi2873g00002 1114 SMART C2_3c 296 418 IPR000008 -
Gabi2873g00002 1114 Pfam C2 domain 295 421 IPR000008 -
Gabi2873g00002 1114 FunFam Phospholipase D delta 496 735 - -
Gabi2873g00002 1114 Pfam Phospholipase D Active site motif 961 987 IPR001736 GO:0003824
Gabi2873g00002 1114 Pfam Phospholipase D Active site motif 622 656 IPR001736 GO:0003824
Gabi2873g00002 1114 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 293 443 IPR035892 -
Gabi2873g00002 1114 Gene3D C2 domain 290 435 IPR035892 -
Gabi2873g00002 1114 Gene3D Endonuclease Chain A 500 735 - -
Gabi2873g00002 1114 SUPERFAMILY Phospholipase D/nuclease 790 1046 - -
Gabi2873g00002 1114 SUPERFAMILY Phospholipase D/nuclease 492 721 - -
Gabi2873g00002 1114 CDD C2_plant_PLD 290 442 - -
Gabi2873g00002 1114 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 621 656 IPR001736 GO:0003824
Gabi2873g00002 1114 SMART pld_4 960 987 IPR001736 GO:0003824
Gabi2873g00002 1114 SMART pld_4 621 656 IPR001736 GO:0003824
Gabi2873g00002 1114 FunFam Phospholipase D delta 290 437 - -
Gabi2873g00002 1114 PANTHER PHOSPHOLIPASE D 285 1105 IPR015679 -
Gabi2873g00002 1114 MobiDBLite consensus disorder prediction 116 145 - -
Gabi2873g00002 1114 FunFam Phospholipase D 769 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2873g00002 Gabi-Chr2873 21194 30050 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2873g00002 18 1114 Phospholipase D Gene Family (Wang group) AT2G42010 66.578 0.0 1457
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2873g00002 K01115 - gmx:100791059 1870.13