Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2863g00018 ATGCCACATGGAAACCTGGTGGGACAGTTCAGAATTGGAGGCATGACATGTGCAGCCTGTGTAGATTCTGTTGAAGGTATTTTGAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTTAGGTGAAGTTGAATATGATCCCAGTGTAATCAGTAAAGATGATATAGTCAATGCAATTGAAGATTCTGGTTTTGAAGCTTCATTTGAACAGAGCAGTGAGCAGGATAAAATAATTTTAGAGGTTGTTGGTGTGTACAGTCTGATTGATGCACAAGTTTTAGAAGGCATTCTAAGCAGCATGAAAGGAGTAAGGCAGTTTCATTTTGACCAGATATCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTCTCAGTTCTAGATCCTTAGTTGATGGGATCCATGGGGGAAGCAATGGAAAGTTTAAACTGCATGTTAGAAGCCCTTATACAAGGATGGCTTCTAAAGTTGAAGAGACCTCAACTATGTTTCGGCTCTTTATCTCCAGCCTGTTTCTTAGTATTCCTCTCTTCTTCATGCGAGTAGTTTGTCCTCATATACCATTAATGTATTCCTTGTTAATTTGGCGATGTGGCCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGGTTGGGAAGCGCTTCTATGTTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTGTGGGAACAACTGCCTCTTATGTCTATTCTGTTTGTGCTCTTCTATATGGTGCTATTACTGGATTTTGGTCCCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACTTCCGATGCCATCAAGAAATTAGTAGAACTTACTCCTGCAACAGCATTATTAGTTGTCAAAGATAAAGGTGGTAGATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTATTCAACCTGGTGACACGTTAAAAGTTGTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCTATTTTGAAGGAAGTAAATGCTTCCGTTATTGGAGGTACAATAAATTTTCATGGCGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACTGTTGTTTCTTTGGCATTATTGACACTACTGGGTTGGTATATTGCTGGCTCTATTGGAGCTTACCCAGAAGAGTGGCTGCCAGAGAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTTGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCTACAGGGGTTGGGGCTAACAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTAATATTTGATAAAACAGGTACTCTAACTCAGGGAAAAGCCACTGTAACTACTGCCAAGGTATTCACAGAAATGGATCGCGGAGAATTTCTTAAGTTGGTGGCTTCTGCTGAGGCTAGTAGTGAACACCCACTGGGAAAAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTACTACTGATGCCCAGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTTCTCTTCCAGGAAGAGGTGTCCAATGCTTTATAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGCTGATGGTGGAAAGTGGCATAGATATTTCAACCGAAGTGGAAAATTGCGTGGTAGAACTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATACGATGATATATTAATTGGAGTCTTAGGGGTTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTTATAGAGGGCCTTCAGAAAATGGGTGTCATACCTGTTATTGTTACAGGAGATAATTGGAGAACAGCTCGTGCCGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCGGAGGTTATGCCTGCTGGAAAGGCTGACGTTGTTAGGTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGACGTTGGTATGGCAATTGGGGCTGGCACTGATATTGCCATAGAAGCTGCTGACTACGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCGATCTTTCCAGGAAGACCTTTTCTCGTATTCGATTGAATTACGTATTCGCTATGGCTTACAACATTGTGGCTATACCAGTTGCTGCCGGGGTTTTATATCCTTCACTGGGGATCAAGCTGCCTCCATGGGTTGCTGGTGCGTGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAGGAGATATAGAAGACCCAGACTCACTACAATACTTGAAATAGTTGTAGAATAA 2616 0.4232 MPHGNLVGQFRIGGMTCAACVDSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEASFEQSSEQDKIILEVVGVYSLIDAQVLEGILSSMKGVRQFHFDQISGELDVLFDPEVLSSRSLVDGIHGGSNGKFKLHVRSPYTRMASKVEETSTMFRLFISSLFLSIPLFFMRVVCPHIPLMYSLLIWRCGPFLMGDWLKWALVSLIQFVVGKRFYVAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGAITGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGRSIEEREIDSLLIQPGDTLKVVPGTKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINFHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKATVTTAKVFTEMDRGEFLKLVASAEASSEHPLGKAILAYARHFHFFDDSSATTDAQNDVKSGWLFDVSDFSSLPGRGVQCFIDGKRILVGNRKLMVESGIDISTEVENCVVELEESAKTGILVAYDDILIGVLGVADPLKREASVVIEGLQKMGVIPVIVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNIVAIPVAAGVLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTTILEIVVE 871
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2863g00018 871 FunFam Copper-transporting ATPase 1, putative 296 418 - -
Gabi2863g00018 871 Pfam Heavy-metal-associated domain 10 70 IPR006121 GO:0046872
Gabi2863g00018 871 Gene3D - 8 73 - -
Gabi2863g00018 871 ProSitePatterns Heavy-metal-associated domain. 12 41 IPR017969 GO:0046872
Gabi2863g00018 871 Gene3D - 495 802 IPR023214 -
Gabi2863g00018 871 NCBIfam HAD-IC family P-type ATPase 606 826 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2863g00018 871 NCBIfam HAD-IC family P-type ATPase 281 555 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2863g00018 871 CDD HMA 9 72 IPR006121 GO:0046872
Gabi2863g00018 871 SUPERFAMILY HMA, heavy metal-associated domain 8 76 IPR036163 GO:0046872
Gabi2863g00018 871 NCBIfam heavy metal translocating P-type ATPase 242 854 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi2863g00018 871 SFLD p-type atpase 510 797 IPR044492 -
Gabi2863g00018 871 Gene3D - 296 418 - -
Gabi2863g00018 871 FunFam Copper-exporting P-type ATPase 625 676 - -
Gabi2863g00018 871 FunFam Copper-transporting ATPase RAN1 535 624 - -
Gabi2863g00018 871 Pfam E1-E2 ATPase 309 507 - -
Gabi2863g00018 871 SUPERFAMILY HAD-like 527 851 IPR036412 -
Gabi2863g00018 871 CDD P-type_ATPase_Cu-like 169 841 - -
Gabi2863g00018 871 SFLD Haloacid Dehalogenase 510 797 - -
Gabi2863g00018 871 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 7 866 - -
Gabi2863g00018 871 FunFam Copper-exporting P-type ATPase A 6 74 - -
Gabi2863g00018 871 Gene3D - 625 676 IPR023299 GO:0000166
Gabi2863g00018 871 Gene3D - 535 624 IPR023299 GO:0000166
Gabi2863g00018 871 ProSiteProfiles Heavy-metal-associated domain profile. 6 72 IPR006121 GO:0046872
Gabi2863g00018 871 SUPERFAMILY Calcium ATPase, transmembrane domain M 265 821 IPR023298 -
Gabi2863g00018 871 ProSitePatterns E1-E2 ATPases phosphorylation site. 530 536 IPR018303 -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 670 681 - -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 364 378 - -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 745 764 - -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 528 542 - -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 692 702 - -
Gabi2863g00018 871 PRINTS P-type cation-transporting ATPase superfamily signature 768 780 - -
Gabi2863g00018 871 Pfam haloacid dehalogenase-like hydrolase 524 759 - -
Gabi2863g00018 871 PRINTS Copper-transporting ATPase 1 signature 7 32 - -
Gabi2863g00018 871 PRINTS Copper-transporting ATPase 1 signature 171 192 - -
Gabi2863g00018 871 PRINTS Copper-transporting ATPase 1 signature 62 82 - -
Gabi2863g00018 871 PRINTS Copper-transporting ATPase 1 signature 33 56 - -
Gabi2863g00018 871 PRINTS Copper-transporting ATPase 1 signature 225 250 - -
Gabi2863g00018 871 SUPERFAMILY Calcium ATPase, transduction domain A 328 414 IPR008250 -
Gabi2863g00018 871 FunFam Probable copper-transporting ATPase HMA5 633 802 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2863g00018 Gabi-Chr2863 297807 304169 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2863g00018 3 871 Primary Pumps ATPases AT5G44790 78.096 0.0 1388
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2863g00018 K17686 - gmx:100804960 1542.71