Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2863g00017 ATGGCTCCAAGTGTAAGAGACCTGCAGCTCACTTCCCTCGCCGGCGGCGATGAATCCGATGACCTCGAGGACGTGCGGCTATTGGACTCCTACGACAGAATTGACGACGGGATAAGGCGAATTCAGGTGAGAGTCTCCGGCATGACCTGCGCCGCTTGCTCTAACTCCGTCGAATCAGCTCTGAAAGCCGTCGACGGCGTTCTCAGCGCTTCCGTCGCCCTGCTCCAGAACAAAGCCGACGTCGTTTTCAACCCTGCTCTGCTCAAGGATGAAGACATTAAAAATGCAATTGAAGATGCAGGGTTTGAAGCAGAAATATTACCTGAATCCAGTACACTTGGAAAGATGCCACATGGAAACCTGGTGGGACAGTTCAGAATTGGAGGCATGACATGTGCAGCCTGTGTAGATTCTGTTGAAGGTATTTTGAGAAATCTTCCTGGGGTCAAAAGGGCTGTGGTAGCTTTGGCTACTTCGTTAGGTGAAGTTGAATATGATCCCAGTGTAATCAGTAAAGATGATATAGTCAATGCAATTGAAGATTCTGGTTTTGAAGCTTCATTTGAACAGAGCAGTGAGCAGGATAAAATAATTTTAGAGGTTGTTGGTGTGTACAGTCTGATTGATGCACAAGTTTTAGAAGGCATTCTAAGCAGCATGAAAGGAGTAAGGCAGTTTCATTTTGACCAGATATCAGGTGAATTGGATGTTCTGTTTGATCCTGAAGTTCTCAGTTCTAGATCCTTAGTTGATGGGATCCATGGGGGAAGCAATGGAAAGTTTAAACTGCATGTTAGAAGCCCTTATACAAGGATGGCTTCTAAAGTTGAAGAGACCTCAACTATGTTTCGGCTCTTTATCTCCAGCCTGTTTCTTAGTATTCCTCTCTTCTTCATGCGAGTAGTTTGTCCTCATATACCATTAATGTATTCCTTGTTAATTTGGCGATGTGGCCCTTTCCTCATGGGTGATTGGTTGAAATGGGCATTGGTGAGTCTCATCCAATTTGTGGTTGGGAAGCGCTTCTATGTTGCAGCTGGCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTGTGGGAACAACTGCCTCTTATGTCTATTCTGTTTGTGCTCTTCTATATGGTGCTATTACTGGATTTTGGTCCCCAACATACTTTGAAACAAGTGCTATGCTCATAACATTTGTATTGTTGGGCAAGTATTTGGAATGCCTTGCTAAGGGAAAGACTTCCGATGCCATCAAGAAATTAGTAGAACTTACTCCTGCAACAGCATTATTAGTTGTCAAAGATAAAGGTGGTAGATCTATTGAAGAAAGGGAAATTGATTCTTTGCTTATTCAACCTGGTGACACGTTAAAAGTTGTTCCTGGTACAAAGATTCCTGCTGATGGTATTGTTACTTGGGGCTCAAGTTATGTAAATGAGAGCATGGTAACTGGTGAATCTGTACCTATTTTGAAGGAAGTAAATGCTTCCGTTATTGGAGGTACAATAAATTTTCATGGCGTCCTTCACATTCAAGCTACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAGTTTGGTTGAGACAGCCCAGATGTCCAAAGCTCCCATTCAGAAGTTTGCTGATTATGTAGCAAGCATATTTGTTCCTACTGTTGTTTCTTTGGCATTATTGACACTACTGGGTTGGTATATTGCTGGCTCTATTGGAGCTTACCCAGAAGAGTGGCTGCCAGAGAATGGAAATCACTTTGTTTTTGCCCTAATGTTCTCAATATCTGTAGTTGTGATTGCATGTCCCTGTGCACTTGGCTTGGCAACACCAACAGCTGTCATGGTGGCTACAGGGGTTGGGGCTAACAATGGAGTGTTAATTAAAGGAGGAGATGCCTTGGAAAGGGCTCAGATGGTGAAGTATGTAATATTTGATAAAACAGGTACTCTAACTCAGGGAAAAGCCACTGTAACTACTGCCAAGGTATTCACAGAAATGGATCGCGGAGAATTTCTTAAGTTGGTGGCTTCTGCTGAGGCTAGTAGTGAACACCCACTGGGAAAAGCGATATTAGCATATGCACGCCATTTTCATTTCTTTGATGACTCTTCTGCTACTACTGATGCCCAGAATGATGTGAAGTCTGGGTGGCTTTTTGATGTCTCAGACTTCTCTTCTCTTCCAGGAAGAGGTGTCCAATGCTTTATAGATGGGAAGCGTATTTTGGTTGGTAACAGGAAGCTGATGGTGGAAAGTGGCATAGATATTTCAACCGAAGTGGAAAATTGCGTGGTAGAACTTGAAGAAAGTGCAAAGACAGGGATACTGGTAGCATACGATGATATATTAATTGGAGTCTTAGGGGTTGCGGACCCACTAAAGAGAGAAGCTTCTGTAGTTATAGAGGGCCTTCAGAAAATGGGTGTCATACCTGTTATTGTTACAGGAGATAATTGGAGAACAGCTCGTGCCGTTGCCAAGGAGGTTGGCATCCAAGATGTTAGGGCGGAGGTTATGCCTGCTGGAAAGGCTGACGTTGTTAGGTCATTCCAAAAAGATGGAAGCATAGTTGCAATGGTGGGTGATGGTATCAATGATTCTCCTGCATTAGCTGCTGCTGACGTTGGTATGGCAATTGGGGCTGGCACTGATATTGCCATAGAAGCTGCTGACTACGTGTTGATGAGAAATAACTTGGAAGATGTGATCACAGCCATCGATCTTTCCAGGAAGACCTTTTCTCGTATTCGATTGAATTACGTATTCGCTATGGCTTACAACATTGTGGCTATACCAGTTGCTGCCGGGGTTTTATATCCTTCACTGGGGATCAAGCTGCCTCCATGGGTTGCTGGTGCGTGCATGGCTCTCTCTTCTGTAAGTGTTGTATGCTCTTCTTTGCTTCTTAGGAGATATAGAAGACCCAGACTCACTACAATACTTGAAATAGTTGTAGAATAA 2961 0.4357 MAPSVRDLQLTSLAGGDESDDLEDVRLLDSYDRIDDGIRRIQVRVSGMTCAACSNSVESALKAVDGVLSASVALLQNKADVVFNPALLKDEDIKNAIEDAGFEAEILPESSTLGKMPHGNLVGQFRIGGMTCAACVDSVEGILRNLPGVKRAVVALATSLGEVEYDPSVISKDDIVNAIEDSGFEASFEQSSEQDKIILEVVGVYSLIDAQVLEGILSSMKGVRQFHFDQISGELDVLFDPEVLSSRSLVDGIHGGSNGKFKLHVRSPYTRMASKVEETSTMFRLFISSLFLSIPLFFMRVVCPHIPLMYSLLIWRCGPFLMGDWLKWALVSLIQFVVGKRFYVAAGRALRNGSTNMDVLVAVGTTASYVYSVCALLYGAITGFWSPTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKGGRSIEEREIDSLLIQPGDTLKVVPGTKIPADGIVTWGSSYVNESMVTGESVPILKEVNASVIGGTINFHGVLHIQATKVGSDTVLSQIISLVETAQMSKAPIQKFADYVASIFVPTVVSLALLTLLGWYIAGSIGAYPEEWLPENGNHFVFALMFSISVVVIACPCALGLATPTAVMVATGVGANNGVLIKGGDALERAQMVKYVIFDKTGTLTQGKATVTTAKVFTEMDRGEFLKLVASAEASSEHPLGKAILAYARHFHFFDDSSATTDAQNDVKSGWLFDVSDFSSLPGRGVQCFIDGKRILVGNRKLMVESGIDISTEVENCVVELEESAKTGILVAYDDILIGVLGVADPLKREASVVIEGLQKMGVIPVIVTGDNWRTARAVAKEVGIQDVRAEVMPAGKADVVRSFQKDGSIVAMVGDGINDSPALAAADVGMAIGAGTDIAIEAADYVLMRNNLEDVITAIDLSRKTFSRIRLNYVFAMAYNIVAIPVAAGVLYPSLGIKLPPWVAGACMALSSVSVVCSSLLLRRYRRPRLTTILEIVVE 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2863g00017 986 Gene3D - 740 791 IPR023299 GO:0000166
Gabi2863g00017 986 Gene3D - 650 739 IPR023299 GO:0000166
Gabi2863g00017 986 SUPERFAMILY HAD-like 642 966 IPR036412 -
Gabi2863g00017 986 FunFam Copper-exporting P-type ATPase A 38 107 - -
Gabi2863g00017 986 Gene3D - 38 109 - -
Gabi2863g00017 986 Pfam Heavy-metal-associated domain 43 103 IPR006121 GO:0046872
Gabi2863g00017 986 Pfam Heavy-metal-associated domain 125 185 IPR006121 GO:0046872
Gabi2863g00017 986 SUPERFAMILY HMA, heavy metal-associated domain 123 191 IPR036163 GO:0046872
Gabi2863g00017 986 NCBIfam copper ion binding protein 124 186 IPR006122 GO:0005507
Gabi2863g00017 986 NCBIfam copper ion binding protein 41 104 IPR006122 GO:0005507
Gabi2863g00017 986 Gene3D - 411 533 - -
Gabi2863g00017 986 FunFam Copper-transporting ATPase RAN1 650 739 - -
Gabi2863g00017 986 SFLD p-type atpase 625 912 IPR044492 -
Gabi2863g00017 986 SUPERFAMILY Calcium ATPase, transduction domain A 443 529 IPR008250 -
Gabi2863g00017 986 Gene3D - 123 188 - -
Gabi2863g00017 986 CDD HMA 124 187 IPR006121 GO:0046872
Gabi2863g00017 986 Pfam haloacid dehalogenase-like hydrolase 639 874 - -
Gabi2863g00017 986 FunFam Copper-transporting ATPase 1, putative 411 533 - -
Gabi2863g00017 986 ProSitePatterns Heavy-metal-associated domain. 127 156 IPR017969 GO:0046872
Gabi2863g00017 986 ProSitePatterns Heavy-metal-associated domain. 45 75 IPR017969 GO:0046872
Gabi2863g00017 986 ProSitePatterns E1-E2 ATPases phosphorylation site. 645 651 IPR018303 -
Gabi2863g00017 986 SFLD C1.7: P-type atpase like 625 912 - -
Gabi2863g00017 986 CDD HMA 42 105 IPR006121 GO:0046872
Gabi2863g00017 986 ProSiteProfiles Heavy-metal-associated domain profile. 39 105 IPR006121 GO:0046872
Gabi2863g00017 986 ProSiteProfiles Heavy-metal-associated domain profile. 121 187 IPR006121 GO:0046872
Gabi2863g00017 986 NCBIfam heavy metal translocating P-type ATPase 357 969 IPR027256 GO:0006812|GO:0016020|GO:0019829
Gabi2863g00017 986 FunFam Copper-exporting P-type ATPase A 121 189 - -
Gabi2863g00017 986 PRINTS Copper-transporting ATPase 1 signature 40 65 - -
Gabi2863g00017 986 PRINTS Copper-transporting ATPase 1 signature 66 89 - -
Gabi2863g00017 986 PRINTS Copper-transporting ATPase 1 signature 95 115 - -
Gabi2863g00017 986 NCBIfam HAD-IC family P-type ATPase 396 670 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2863g00017 986 NCBIfam HAD-IC family P-type ATPase 720 941 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Gabi2863g00017 986 Pfam E1-E2 ATPase 424 622 - -
Gabi2863g00017 986 CDD P-type_ATPase_Cu-like 284 956 - -
Gabi2863g00017 986 SUPERFAMILY HMA, heavy metal-associated domain 35 109 IPR036163 GO:0046872
Gabi2863g00017 986 PANTHER P-TYPE CATION-TRANSPORTING ATPASE 34 981 - -
Gabi2863g00017 986 SUPERFAMILY Calcium ATPase, transmembrane domain M 380 936 IPR023298 -
Gabi2863g00017 986 FunFam Copper-exporting P-type ATPase 740 791 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 479 493 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 883 895 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 785 796 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 643 657 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 807 817 - -
Gabi2863g00017 986 PRINTS P-type cation-transporting ATPase superfamily signature 860 879 - -
Gabi2863g00017 986 FunFam Probable copper-transporting ATPase HMA5 748 917 - -
Gabi2863g00017 986 Gene3D - 610 917 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2863g00017 Gabi-Chr2863 297571 304169 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2863g00017 1 986 Primary Pumps ATPases AT5G44790 75.646 0.0 1524
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2863g00017 K17686 - gmx:100804960 1716.82