Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2863g00012 ATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGTCTTACTTCTGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTATCGTTAATGGCACAATAATGAACCCTGTGCCATTGAATTATTTCAAGCAGTTTCCTGACCATGTATCCACTGGGTTTGCATATCTGAGTATGGGTATTGCAGACACAAGGATGCCTATAAGTTGCTCCTCCTCTTCTTCTTGTAAGGACATGGCAGTTTATGGGCAAGATCGATCTTTTGAGCATGCTGCTTCTTTAGCTGTTAACCCTGATTCACAGTCTGTTTCACAGTCACTTGTCAATTACTGCATTAACGACTCCAATCACTTAAATTCAAACTCAGCAGCATTCAACAGCATAATATCTTGTCCGATGTTAGTCGAAGAATGCTGTTGGCTTTATGAGGATAATAAGGGTATGAAACATGGGCCCCATTCTATTTCAGAATTGATTTCCTGGCACCGTCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTCTGACAAGAAGCATGGCACCTTTGTGCTACTGTCTGCTGTAAATGCATTGAAAGGAGATATATCAAGAACCGTCTATGGATCAGGTTCCAAAAGCAATGAGGTTGGTTGTATGGTTGACTTAATTTGTGAAATATCTGAAAACATTTCTTCCCAACTGCACTTGGGTGTCATGAAAGCTGCCCGCAGAGTTGTGCTGGATGGGATTATTGGTGATATCATTGCGGAATTTGTTACTGAAAAGAAACATAAGAGGCATAAGCTTGAATCAGCTGATCAGGTGTCTGAGACTTGCATATTGGACAGCAAAATGTCTAAGTTTGCTGTGGAGATAAGTAAAGGTACTGCCATTCCAAGTAAGCCTGCATCTTCCCATATTTTGGATGATCAGGCATGTCTTGAGATTTCCAGATCGTCTTCAACAAGCAATAAATCTGTTGGAAGTGTTGAAAATTTTTGGTGGTCATACGCTGTTGTTCGGAAAGTACTTTTTGATTATTGCATGCAAGTCATGTGGAATTCTGTGTTTTTTGACACACTAGCAGAATACTTAATTTCCTGGAGAAAGAGCAAACTTTGGTCTTGCCCTAAACATGAACCATCTGCTAATGGATGTGGAGATTATTATGTTGAAAAGATTGAATCTGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGAATGCAATGCTGATGGCAATAATCGGTTCAGAGCGCTTTCAATGGAAAGAGATTATCATCCTCTATTGTCCTCATCTCCTAGTAGCCTCAAAGGTGGAAACGTACTTGAAGGTCAAAGAGTTTCATGCACTTATTATAACTCTAAAGATTTGACATGCATTCTTGAAAATGTGGAGAATGAGCTTCATTCCTCTTCAAAGTTGTCTTTAGCTGAATACGTTCGAAGCTTTGTTGAAGAGGAAGTGAACAAATTAATTCATTTGCCAGGAAAATGCGAATTGCGTGAGGTTGCTGTAAGTGACTGCGGTTTTTCAGAGATAATTACTGGTAAAACATCTGTGAAGGAAATTCTGAATGACAATTCTGTGGATCCTGTAAAAGCTGGGGATTCATTTTTTGAGTCTTCATCTGGAAACCAAATGTTTAATGTATTCTCAAAAGCATTTAAGGAGTTGTATGGATACATAGGTAATGTGGTTAATGAAGAGGAGATTTGTGATCTACCACCTGGATTTGAAGAGAAATCTCGAACAATCTCCCTCCACCACAATTCTAAATTTCGACCTTCAAGGTTAGTTGAATGTAATCCTAAGATTCCAGAATATGTTGCAACTGCACTGTGCCGGCAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTCGTTGTTTCTTGATTCTGCACTCAATCAAAGCGGTATATCATCATGTACCATAAAGAAACATTTTCAGTCTGATGGTCACGAGAAAGGGAAAGTATTCAGTGTAAGCAAGGAACATTTGAATGATGCTACTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAAAAGTTCTTCTGGTGTTCCTCTGGTGGTTGGAAAGTATACATATTACCGCAAGAAGCTATCACGGAAGGAGTTGTGTTCATCACAATCTGTAGCAGATGATTCTGGGCCAGGGAAGCAGCCTGTGGCTAAGTTAAGGAAACTTGTTTCTGGAGATGTGGGTGAGACTGCAGAAATTAAAAAAGCTGCTGTTAATCGTGGAAAGACTAGGGTGATTAAAGGGAAGGATACATCTTCTAAGGGCAGGTCGTCTCCTGTCAATGTCAACAATGATGTTATGGATGTTGTAAAATCTAAGGGTGTTGGCATGAAGAAGGTGGTTAGAAGTGGCTGTGATGGCTCCATTCAAGGGAAGACCACTGGTCATTGCTCCAGAGAGATACTAAATGCAACAAATAAAGTGTCAAAATCAAAAAGGAAGCATCTAATGGATGGTATGGCATCATCCCGTCCTGGGAAGGTTTTGAAAATTTCAAATGATGGTGCGAAGCTGGGAGCTAGCAAACACGTTTCTAAGGCAAGGAGGAATTCTGCTAAGTCCAAGCCATTGAATTTATGTCCTAGATCTGACGGATGTGCTAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTCGAAGTGCCAGTCCTGCATACAGAGCACGTGTCAGGGGTCTTCCATGTCTACCAAACAAGTGTATAGATTCTGAAAATAATTTATCTCAGTTGTCAAATGGAAAGGGTCTTTCTGCCAGAACAAATAGGGTGAAATGGCGTAATCTTCTTGCTGCTACTGAGTGTGCGGATCTTCTGAAAGGGCCTCAATTAAAGGCTAGGAAAAAGCGTTTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGATGACGTTGTGATTGAATATATCGGAGAATTAATCCGTCCTCGGATATCTGATATACGTGAGCGTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGATATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCTAACTGCTATACAAAGGTTATATCCGTGGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGGCATATAGCTGCTGGTGAGGAAATTACATACGATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTAGATCATTGAATTAG 3267 0.4065 MCGPYIKEQLYEGLTSGFLPFELPVYPIVNGTIMNPVPLNYFKQFPDHVSTGFAYLSMGIADTRMPISCSSSSSCKDMAVYGQDRSFEHAASLAVNPDSQSVSQSLVNYCINDSNHLNSNSAAFNSIISCPMLVEECCWLYEDNKGMKHGPHSISELISWHRHGYLEDSTVISHSDKKHGTFVLLSAVNALKGDISRTVYGSGSKSNEVGCMVDLICEISENISSQLHLGVMKAARRVVLDGIIGDIIAEFVTEKKHKRHKLESADQVSETCILDSKMSKFAVEISKGTAIPSKPASSHILDDQACLEISRSSSTSNKSVGSVENFWWSYAVVRKVLFDYCMQVMWNSVFFDTLAEYLISWRKSKLWSCPKHEPSANGCGDYYVEKIESEALVLRPGSSECNADGNNRFRALSMERDYHPLLSSSPSSLKGGNVLEGQRVSCTYYNSKDLTCILENVENELHSSSKLSLAEYVRSFVEEEVNKLIHLPGKCELREVAVSDCGFSEIITGKTSVKEILNDNSVDPVKAGDSFFESSSGNQMFNVFSKAFKELYGYIGNVVNEEEICDLPPGFEEKSRTISLHHNSKFRPSRLVECNPKIPEYVATALCRQKLHDEVLEEWKSLFLDSALNQSGISSCTIKKHFQSDGHEKGKVFSVSKEHLNDATSGLGRVKEGAKSSSGVPLVVGKYTYYRKKLSRKELCSSQSVADDSGPGKQPVAKLRKLVSGDVGETAEIKKAAVNRGKTRVIKGKDTSSKGRSSPVNVNNDVMDVVKSKGVGMKKVVRSGCDGSIQGKTTGHCSREILNATNKVSKSKRKHLMDGMASSRPGKVLKISNDGAKLGASKHVSKARRNSAKSKPLNLCPRSDGCARTSIDGWEWHKWSRSASPAYRARVRGLPCLPNKCIDSENNLSQLSNGKGLSARTNRVKWRNLLAATECADLLKGPQLKARKKRLRFQRSKIHDWGLVALEPIEADDVVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYDYKFPLEEKKIPCNCGSKKCRRSLN 1088
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2863g00012 1088 ProSiteProfiles SET domain profile. 949 1066 IPR001214 GO:0005515
Gabi2863g00012 1088 Pfam SET domain 961 1065 IPR001214 GO:0005515
Gabi2863g00012 1088 CDD SET_SETD1 937 1084 IPR037841 GO:0042800|GO:0048188
Gabi2863g00012 1088 SMART PostSET_3 1072 1088 IPR003616 -
Gabi2863g00012 1088 Gene3D - 129 209 IPR035445 -
Gabi2863g00012 1088 Gene3D SET domain 895 1088 IPR046341 -
Gabi2863g00012 1088 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 806 1088 IPR044570 GO:0042800|GO:0051568
Gabi2863g00012 1088 SUPERFAMILY GYF domain 132 190 IPR035445 -
Gabi2863g00012 1088 ProSiteProfiles GYF domain profile. 136 186 IPR003169 GO:0005515
Gabi2863g00012 1088 SMART set_7 949 1072 IPR001214 GO:0005515
Gabi2863g00012 1088 ProSiteProfiles Post-SET domain profile. 1072 1088 IPR003616 -
Gabi2863g00012 1088 SUPERFAMILY SET domain 895 1084 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2863g00012 Gabi-Chr2863 217941 237605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2863g00012 948 1084 C2H2 Transcription Factor Family AT2G23740 37.107 6.93e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2863g00012 SET 9.9e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2863g00012 - - gmx:100805708 1567.36