Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2863g00011 ATGTGTGGTCCCTATATTAAGGAGCAGTTATATGAGGGTCTTACTTCTGGTTTCTTGCCATTTGAGCTTCCTGTGTATCCTATCGTTAATGGCACAATAATGAACCCTGTGCCATTGAATTATTTCAAGCAGTTTCCTGACCATGTATCCACTGGGTTTGCATATCTGAGTATGGGTATTGCAGACACAAGGATGCCTATAAGTTGCTCCTCCTCTTCTTCTTGTAAGGACATGGCAGTTTATGGGCAAGATCGATCTTTTGAGCATGCTGCTTCTTTAGCTGTTAACCCTGATTCACAGTCTGTTTCACAGTCACTTGTCAATTACTGCATTAACGACTCCAATCACTTAAATTCAAACTCAGCAGCATTCAACAGCATAATATCTTGTCCGATGTTAGTCGAAGAATGCTGTTGGCTTTATGAGGATAATAAGGGTATGAAACATGGGCCCCATTCTATTTCAGAATTGATTTCCTGGCACCGTCATGGATATCTTGAAGATTCAACAGTGATCTCTCATTCTGACAAGAAGCATGGCACCTTTGTGCTACTGTCTGCTGTAAATGCATTGAAAGGAGATATATCAAGAACCGTCTATGGATCAGGTTCCAAAAGCAATGAGGTTGGTTGTATGGTTGACTTAATTTGTGAAATATCTGAAAACATTTCTTCCCAACTGCACTTGGGTGTCATGAAAGCTGCCCGCAGAGTTGTGCTGGATGGGATTATTGGTGATATCATTGCGGAATTTGTTACTGAAAAGAAACATAAGAGGCATAAGCTTGAATCAGCTGATCAGGTGTCTGAGACTTGCATATTGGACAGCAAAATGTCTAAGTTTGCTGTGGAGATAAGTAAAGGTACTGCCATTCCAAGTAAGCCTGCATCTTCCCATATTTTGGATGATCAGGCATGTCTTGAGATTTCCAGATCGTCTTCAACAAGCAATAAATCTGTTGGAAGTGTTGAAAATTTTTGGTGGTCATACGCTGTTGTTCGGAAAGTACTTTTTGATTATTGCATGCAAGTCATGTGGAATTCTGTGTTTTTTGACACACTAGCAGAATACTTAATTTCCTGGAGAAAGAGCAAACTTTGGTCTTGCCCTAAACATGAACCATCTGCTAATGGATGTGGAGATTATTATGTTGAAAAGATTGAATCTGAAGCTTTGGTTCTCAGGCCAGGTTCCTCTGAATGCAATGCTGATGGCAATAATCGGTTCAGAGCGCTTTCAATGGAAAGAGATTATCATCCTCTATTGTCCTCATCTCCTAGTAGCCTCAAAGGTGGAAACGTACTTGAAGGTCAAAGAGTTTCATGCACTTATTATAACTCTAAAGATTTGACATGCATTCTTGAAAATGTGGAGAATGAGCTTCATTCCTCTTCAAAGTTGTCTTTAGCTGAATACGTTCGAAGCTTTGTTGAAGAGGAAGTGAACAAATTAATTCATTTGCCAGGAAAATGCGAATTGCGTGAGGTTGCTGTAAGTGACTGCGGTTTTTCAGAGATAATTACTGGTAAAACATCTGTGAAGGAAATTCTGAATGACAATTCTGTGGATCCTGTAAAAGCTGGGGATTCATTTTTTGAGTCTTCATCTGGAAACCAAATGTTTAATGTATTCTCAAAAGCATTTAAGGAGTTGTATGGATACATAGGTAATGTGGTTAATGAAGAGGAGATTTGTGATCTACCACCTGGATTTGAAGAGAAATCTCGAACAATCTCCCTCCACCACAATTCTAAATTTCGACCTTCAAGGTTAGTTGAATGTAATCCTAAGATTCCAGAATATGTTGCAACTGCACTGTGCCGGCAGAAGCTGCATGATGAAGTTCTAGAAGAGTGGAAGTCGTTGTTTCTTGATTCTGCACTCAATCAAAGCGGTATATCATCATGTACCATAAAGAAACATTTTCAGTCTGATGGTCACGAGAAAGGGAAAGTATTCAGTGTAAGCAAGGAACATTTGAATGATGCTACTTCTGGACTGGGAAGAGTGAAGGAAGGAGCAAAAAGTTCTTCTGGTGTTCCTCTGGTGGTTGGAAAGTATACATATTACCGCAAGAAGCTATCACGGAAGGAGTTGTGTTCATCACAATCTGTAGCAGATGATTCTGGGCCAGGGAAGCAGCCTGTGGCTAAGTTAAGGAAACTTGTTTCTGGAGATGTGGGTGAGACTGCAGAAATTAAAAAAGCTGCTGTTAATCGTGGAAAGACTAGGGTGATTAAAGGGAAGGATACATCTTCTAAGGGCAGGTCGTCTCCTGTCAATGTCAACAGTAGGTTGCATAGTGATCAATTATCCTTGAAGAATAAAACTAATCGGAAAGTTTTGAAGTTCTCACATAAAGTTCAAAATGATGTTATGGATGTTGTAAAATCTAAGGGTGTTGGCATGAAGAAGGTGGTTAGAAGTGGCTGTGATGGCTCCATTCAAGGGAAGACCACTGGTCATTGCTCCAGAGAGATACTAAATGCAACAAATAAAGTGTCAAAATCAAAAAGGAAGCATCTAATGGATGGTATGGCATCATCCCGTCCTGGGAAGGTTTTGAAAATTTCAAATGATGGTGCGAAGCTGGGAGCTAGCAAACACGTTTCTAAGGCAAGGAGGAATTCTGCTAAGTCCAAGCCATTGAATTTATGTCCTAGATCTGACGGATGTGCTAGGACTTCTATTGATGGGTGGGAATGGCATAAATGGTCTCGAAGTGCCAGTCCTGCATACAGAGCACGTGTCAGGGGTCTTCCATGTCTACCAAACAAGTGTATAGATTCTGAAAATAATTTATCTCAGTTGTCAAATGGAAAGGGTCTTTCTGCCAGAACAAATAGGGTGAAATGGCGTAATCTTCTTGCTGCTACTGAGTGTGCGGATCTTCTGAAAGGGCCTCAATTAAAGGCTAGGAAAAAGCGTTTACGTTTTCAAAGGAGCAAGATACATGACTGGGGTCTTGTTGCCTTGGAGCCAATAGAGGCAGATGACGTTGTGATTGAATATATCGGAGAATTAATCCGTCCTCGGATATCTGATATACGTGAGCGTCAATATGAGAAGATGGGAATTGGAAGCAGTTACCTTTTTAGACTTGATGATGGATATGTGGTTGATGCTACAAAGAGAGGTGGGATTGCAAGATTTATTAACCATTCTTGTGAGCCTAACTGCTATACAAAGGTTATATCCGTGGAGGGTCAAAAGAAGATTTTCATATATGCAAAACGGCATATAGCTGCTGGTGAGGAAATTACATACGATTATAAGTTCCCCTTGGAGGAGAAAAAGATTCCCTGCAACTGTGGTTCCAAAAAGTGTCGTAGATCATTGAATTAG 3345 0.4042 MCGPYIKEQLYEGLTSGFLPFELPVYPIVNGTIMNPVPLNYFKQFPDHVSTGFAYLSMGIADTRMPISCSSSSSCKDMAVYGQDRSFEHAASLAVNPDSQSVSQSLVNYCINDSNHLNSNSAAFNSIISCPMLVEECCWLYEDNKGMKHGPHSISELISWHRHGYLEDSTVISHSDKKHGTFVLLSAVNALKGDISRTVYGSGSKSNEVGCMVDLICEISENISSQLHLGVMKAARRVVLDGIIGDIIAEFVTEKKHKRHKLESADQVSETCILDSKMSKFAVEISKGTAIPSKPASSHILDDQACLEISRSSSTSNKSVGSVENFWWSYAVVRKVLFDYCMQVMWNSVFFDTLAEYLISWRKSKLWSCPKHEPSANGCGDYYVEKIESEALVLRPGSSECNADGNNRFRALSMERDYHPLLSSSPSSLKGGNVLEGQRVSCTYYNSKDLTCILENVENELHSSSKLSLAEYVRSFVEEEVNKLIHLPGKCELREVAVSDCGFSEIITGKTSVKEILNDNSVDPVKAGDSFFESSSGNQMFNVFSKAFKELYGYIGNVVNEEEICDLPPGFEEKSRTISLHHNSKFRPSRLVECNPKIPEYVATALCRQKLHDEVLEEWKSLFLDSALNQSGISSCTIKKHFQSDGHEKGKVFSVSKEHLNDATSGLGRVKEGAKSSSGVPLVVGKYTYYRKKLSRKELCSSQSVADDSGPGKQPVAKLRKLVSGDVGETAEIKKAAVNRGKTRVIKGKDTSSKGRSSPVNVNSRLHSDQLSLKNKTNRKVLKFSHKVQNDVMDVVKSKGVGMKKVVRSGCDGSIQGKTTGHCSREILNATNKVSKSKRKHLMDGMASSRPGKVLKISNDGAKLGASKHVSKARRNSAKSKPLNLCPRSDGCARTSIDGWEWHKWSRSASPAYRARVRGLPCLPNKCIDSENNLSQLSNGKGLSARTNRVKWRNLLAATECADLLKGPQLKARKKRLRFQRSKIHDWGLVALEPIEADDVVIEYIGELIRPRISDIRERQYEKMGIGSSYLFRLDDGYVVDATKRGGIARFINHSCEPNCYTKVISVEGQKKIFIYAKRHIAAGEEITYDYKFPLEEKKIPCNCGSKKCRRSLN 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2863g00011 1114 SMART PostSET_3 1098 1114 IPR003616 -
Gabi2863g00011 1114 Gene3D SET domain 921 1114 IPR046341 -
Gabi2863g00011 1114 ProSiteProfiles SET domain profile. 975 1092 IPR001214 GO:0005515
Gabi2863g00011 1114 SUPERFAMILY SET domain 921 1110 IPR046341 -
Gabi2863g00011 1114 ProSiteProfiles Post-SET domain profile. 1098 1114 IPR003616 -
Gabi2863g00011 1114 Pfam SET domain 987 1091 IPR001214 GO:0005515
Gabi2863g00011 1114 SUPERFAMILY GYF domain 132 190 IPR035445 -
Gabi2863g00011 1114 CDD SET_SETD1 963 1110 IPR037841 GO:0042800|GO:0048188
Gabi2863g00011 1114 SMART set_7 975 1098 IPR001214 GO:0005515
Gabi2863g00011 1114 ProSiteProfiles GYF domain profile. 136 186 IPR003169 GO:0005515
Gabi2863g00011 1114 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE SETD1 1 1114 IPR044570 GO:0042800|GO:0051568
Gabi2863g00011 1114 Gene3D - 129 209 IPR035445 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2863g00011 Gabi-Chr2863 212649 237605 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2863g00011 974 1110 C2H2 Transcription Factor Family AT2G23740 37.107 6.38e-18 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Gabi2863g00011 SET 1e-21 No_clan