Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2863g00009 ATGGGAAAATTTGCAGCAGAGATTAGAGATACAACGAGGAATGACACAAGGGTTTGGCTTGGAACCTTTGATAGTGCAGACTCTGCTGCTTTAGCTTATGACCAAACTGCATTTTCCATGAGAGGCCATAAAGCTGCACTCAATTTTCCAGTCAAAAGGGTAAAAAAATCTTTGCAAGAAATCAAATATGGTTGCTTGCAAGGTTTTTCACCAGCACTTGCACTCAAGGAGTGGAACTGCATCCAAAGAAATTTGTCAACACAATCGGGGTATACAACATGCCACCTGATCTGGAAGATGTTCAAGCTTGAAAATATCTCTGATTGGGGACAAATGGCATACGATCCACTTTTTGTTTGTTTAGGATAA 369 0.4038 MGKFAAEIRDTTRNDTRVWLGTFDSADSAALAYDQTAFSMRGHKAALNFPVKRVKKSLQEIKYGCLQGFSPALALKEWNCIQRNLSTQSGYTTCHLIWKMFKLENISDWGQMAYDPLFVCLG 122
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2863g00009 122 PANTHER DNA-BINDING DOMAIN 2 59 IPR044808 GO:0003700|GO:0009873
Gabi2863g00009 122 ProSiteProfiles AP2/ERF domain profile. 1 50 IPR001471 GO:0003700|GO:0006355
Gabi2863g00009 122 CDD AP2 2 51 IPR001471 GO:0003700|GO:0006355
Gabi2863g00009 122 SUPERFAMILY DNA-binding domain 2 51 IPR016177 GO:0003677
Gabi2863g00009 122 Pfam AP2 domain 2 43 IPR001471 GO:0003700|GO:0006355
Gabi2863g00009 122 Gene3D AP2/ERF domain 1 52 IPR036955 GO:0003700|GO:0006355
Gabi2863g00009 122 SMART rav1_2 2 56 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2863g00009 Gabi-Chr2863 134667 135035 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2863g00009 2 118 AP2-EREBP Transcription Factor Family AT3G23240 50.000 3.00e-32 111
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Gabi2863g00009 AP2 2.2e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2863g00009 K14516 - gmx:100812017 139.043