Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2860g00002 ATGGTTCGCTCCCAAGGTGTCAGTCTCTTCAACCGCCTTGCTCGTCGATCGCTCTGTGACACAAAAGATTCCGTATATCAAGCAGTGTTCCGAACGGGTTATAGGACATTGAACTCGAGGCCTTGCAATCCATCTAGAGTTCTTGTTGGAAATGGGTTTAATTTGAAGAACTGGTTGCTATTGGGAGCGCTGAACACATATTGGGGGGCATCTAGATCAATTCATGGCTCTGCATCATTGGCAAGAGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCTTATTATGGGCTAGCAAAGCAGCTCCATCCAGACACGAACAAAGATGATCCTGAAGCTGAAAAAAAGTTTCAAGAAGTTTCAATGGCATATGAGATATTGAAGGATGAAGAAAGGCGTCAACAGTATGATCAGGTTGGTCATGATGCCTATGTAAACCAACAAAGCACTGGTTTCGGAGGAGAGGGTGGCTTTAATCCTTTTGAGCAGATATTCCGTGATCATGGTTTTGACAAGAACTTTTTCTATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCAAGGGTGCACCAAAACTGTGACATTTCAAACGGATGTGCTCTGTAATGCTTGTGGTGGGAGTGGTGTTCCCCCTGGTACAAGACCTGAAACATGTAAGCGATGCAAAGGGTCGGGCATTACGTTTGTACAAGCTGGCATATTCAGAATGGAGAGTACTTGTGGTACCTGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCTTGCAGGGGTGCAAAGGTTATCAAAGGAACAAAGTCAGTCAAACTGGATATAATGCCTGGTATAGACAACAATGAGACTATAAAGGTTTATAGAAGTGGTGGAACAGATCCTGATGGAGACCCTGGTGATCTCTATGTTACTATCAAGGTTAGGGAAGACCCTGTTTTTCGCAGAGAAGGATCTGATATTCACGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGGGGAACCATTCAGGTCCCAACTCTTACAGGGGATGTTGTTCTTAAGGTTCGCCCAGGCACCCAACCTGGTCAGAAGGTGGTTTTGAAAAAGAAAGGGATCAAAACAAAAAAATCTTACACACTTGGGGATCAATACGTTCATTTTAATGTCACCATCCCAACAAACCTGACACAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGGGAATTTGATAAAGGTAGAGCTGCTTCCGCTTCAGGTTGA 1311 0.4302 MVRSQGVSLFNRLARRSLCDTKDSVYQAVFRTGYRTLNSRPCNPSRVLVGNGFNLKNWLLLGALNTYWGASRSIHGSASLARDYYDVLGVSKNASSSEIKKAYYGLAKQLHPDTNKDDPEAEKKFQEVSMAYEILKDEERRQQYDQVGHDAYVNQQSTGFGGEGGFNPFEQIFRDHGFDKNFFYQNIGGEDVKTFIELSFMEAVQGCTKTVTFQTDVLCNACGGSGVPPGTRPETCKRCKGSGITFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGAKVIKGTKSVKLDIMPGIDNNETIKVYRSGGTDPDGDPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKKSYTLGDQYVHFNVTIPTNLTQRQRELIEEFAKEEQGEFDKGRAASASG 436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2860g00002 436 ProSitePatterns Nt-dnaJ domain signature. 125 144 IPR018253 -
Gabi2860g00002 436 Gene3D - 219 279 - -
Gabi2860g00002 436 PRINTS DnaJ domain signature 120 140 IPR001623 -
Gabi2860g00002 436 PRINTS DnaJ domain signature 85 103 IPR001623 -
Gabi2860g00002 436 PRINTS DnaJ domain signature 140 159 IPR001623 -
Gabi2860g00002 436 PRINTS DnaJ domain signature 103 118 IPR001623 -
Gabi2860g00002 436 Gene3D - 191 320 - -
Gabi2860g00002 436 Pfam DnaJ C terminal domain 195 404 IPR002939 -
Gabi2860g00002 436 FunFam Chaperone protein dnaJ GFA2, mitochondrial 80 191 - -
Gabi2860g00002 436 Gene3D DnaJ domain 80 190 IPR036869 -
Gabi2860g00002 436 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 49 428 - -
Gabi2860g00002 436 SUPERFAMILY HSP40/DnaJ peptide-binding domain 189 332 IPR008971 GO:0006457|GO:0051082
Gabi2860g00002 436 ProSiteProfiles Zinc finger CR-type profile. 206 284 IPR001305 GO:0031072|GO:0051082
Gabi2860g00002 436 Gene3D - 326 432 - -
Gabi2860g00002 436 SMART dnaj_3 82 140 IPR001623 -
Gabi2860g00002 436 Pfam DnaJ central domain 219 279 IPR001305 GO:0031072|GO:0051082
Gabi2860g00002 436 SUPERFAMILY Chaperone J-domain 82 185 IPR036869 -
Gabi2860g00002 436 ProSiteProfiles dnaJ domain profile. 83 148 IPR001623 -
Gabi2860g00002 436 FunFam Molecular chaperone DnaJ 211 284 - -
Gabi2860g00002 436 FunFam Chaperone protein dnaJ 1, mitochondrial 325 431 - -
Gabi2860g00002 436 CDD DnaJ_zf 219 279 IPR001305 GO:0031072|GO:0051082
Gabi2860g00002 436 Hamap Chaperone protein DnaJ [dnaJ]. 80 432 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi2860g00002 436 Pfam DnaJ domain 83 145 IPR001623 -
Gabi2860g00002 436 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 206 281 IPR036410 -
Gabi2860g00002 436 CDD DnaJ_C 190 407 - -
Gabi2860g00002 436 SUPERFAMILY HSP40/DnaJ peptide-binding domain 329 415 IPR008971 GO:0006457|GO:0051082
Gabi2860g00002 436 CDD DnaJ 83 137 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2860g00002 Gabi-Chr2860 4879 11463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2860g00002 76 145 C2H2 Transcription Factor Family AT1G74250 42.667 1.85e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2860g00002 K03686 - gmx:100799735 768.459