Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2860g00001 ATGGTTCGCTCCCAAGGTGTCAGTCTCTTCAACCGCCTTGCTCGTCGATCGCTCTGTGACACAAAAGATTCCGTATATCAAGCAGTGTTCCGAACGGGTTATAGGACATTGAACTCGAGGCCTTGCAATCCATCTAGAGTTCTTGGTAACTATGCACCAAATGTTATGTTTGGAAATGGGTTTAATTTGAAGAACTGGTTGCTATTGGGAGCGCTGAACACATATTGGGGGGCATCTAGATCAATTCATGGCTCTGCATCATTGGCAAGAGACTATTATGATGTTCTTGGTGTGAGTAAGAATGCAAGTTCTTCTGAAATAAAGAAAGCTTATTATGGGCTAGCAAAGCAGCTCCATCCAGACACGAACAAAGATGATCCTGAAGCTGAAAAAAAGTTTCAAGAAGTTTCAATGGCATATGAGATATTGAAGGATGAAGAAAGGCGTCAACAGTATGATCAGGTTGGTCATGATGCCTATGTAAACCAACAAAGCACTGGTTTCGGAGGAGAGGGTGGCTTTAATCCTTTTGAGCAGATATTCCGTGATCATGGTTTTGACAAGAACTTTTTCTATCAGAATATTGGTGGAGAGGATGTCAAGACTTTCATTGAACTATCTTTTATGGAAGCTGTCCAAGGGTGCACCAAAACTGTGACATTTCAAACGGATGTGCTCTGTAATGCTTGTGGTGGGAGTGGTGTTCCCCCTGGTACAAGACCTGAAACATGTAAGCGATGCAAAGGGTCGGGCATTACGTTTGTACAAGCTGGCATATTCAGAATGGAGAGTACTTGTGGTACCTGTAAGGGAACTGGAAAAATTGTATCGAATTTCTGCAAGTCTTGCAGGGGTGCAAAGGTTATCAAAGGAACAAAGTCAGTCAAACTGGATATAATGCCTGGTATAGACAACAATGAGACTATAAAGGTTTATAGAAGTGGTGGAACAGATCCTGATGGAGACCCTGGTGATCTCTATGTTACTATCAAGGTTAGGGAAGACCCTGTTTTTCGCAGAGAAGGATCTGATATTCACGTAGATGCTGTTTTAAGTATCACTCAGGCGATTTTGGGGGGAACCATTCAGGTCCCAACTCTTACAGGGGATGTTGTTCTTAAGGTTCGCCCAGGCACCCAACCTGGTCAGAAGGTGGTTTTGAAAAAGAAAGGGATCAAAACAAAAAAATCTTACACACTTGGGGATCAATACGTTCATTTTAATGTCACCATCCCAACAAACCTGACACAGAGACAGCGTGAATTGATTGAAGAGTTTGCCAAGGAAGAGCAAGGGGAATTTGATAAAGGTAGAGCTGCTTCCGCTTCAGGTTGA 1335 0.4285 MVRSQGVSLFNRLARRSLCDTKDSVYQAVFRTGYRTLNSRPCNPSRVLGNYAPNVMFGNGFNLKNWLLLGALNTYWGASRSIHGSASLARDYYDVLGVSKNASSSEIKKAYYGLAKQLHPDTNKDDPEAEKKFQEVSMAYEILKDEERRQQYDQVGHDAYVNQQSTGFGGEGGFNPFEQIFRDHGFDKNFFYQNIGGEDVKTFIELSFMEAVQGCTKTVTFQTDVLCNACGGSGVPPGTRPETCKRCKGSGITFVQAGIFRMESTCGTCKGTGKIVSNFCKSCRGAKVIKGTKSVKLDIMPGIDNNETIKVYRSGGTDPDGDPGDLYVTIKVREDPVFRREGSDIHVDAVLSITQAILGGTIQVPTLTGDVVLKVRPGTQPGQKVVLKKKGIKTKKSYTLGDQYVHFNVTIPTNLTQRQRELIEEFAKEEQGEFDKGRAASASG 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2860g00001 444 ProSiteProfiles dnaJ domain profile. 91 156 IPR001623 -
Gabi2860g00001 444 Gene3D DnaJ domain 88 198 IPR036869 -
Gabi2860g00001 444 Gene3D - 227 287 - -
Gabi2860g00001 444 Gene3D - 199 328 - -
Gabi2860g00001 444 FunFam Molecular chaperone DnaJ 219 292 - -
Gabi2860g00001 444 Hamap Chaperone protein DnaJ [dnaJ]. 88 440 IPR012724 GO:0005524|GO:0006457|GO:0009408|GO:0051082
Gabi2860g00001 444 FunFam Chaperone protein dnaJ GFA2, mitochondrial 88 199 - -
Gabi2860g00001 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 197 340 IPR008971 GO:0006457|GO:0051082
Gabi2860g00001 444 Gene3D - 334 440 - -
Gabi2860g00001 444 Pfam DnaJ central domain 227 287 IPR001305 GO:0031072|GO:0051082
Gabi2860g00001 444 SUPERFAMILY Chaperone J-domain 90 193 IPR036869 -
Gabi2860g00001 444 Pfam DnaJ C terminal domain 203 412 IPR002939 -
Gabi2860g00001 444 Pfam DnaJ domain 91 153 IPR001623 -
Gabi2860g00001 444 PRINTS DnaJ domain signature 148 167 IPR001623 -
Gabi2860g00001 444 PRINTS DnaJ domain signature 93 111 IPR001623 -
Gabi2860g00001 444 PRINTS DnaJ domain signature 111 126 IPR001623 -
Gabi2860g00001 444 PRINTS DnaJ domain signature 128 148 IPR001623 -
Gabi2860g00001 444 ProSiteProfiles Zinc finger CR-type profile. 214 292 IPR001305 GO:0031072|GO:0051082
Gabi2860g00001 444 SMART dnaj_3 90 148 IPR001623 -
Gabi2860g00001 444 SUPERFAMILY DnaJ/Hsp40 cysteine-rich domain 214 289 IPR036410 -
Gabi2860g00001 444 SUPERFAMILY HSP40/DnaJ peptide-binding domain 337 423 IPR008971 GO:0006457|GO:0051082
Gabi2860g00001 444 CDD DnaJ_zf 227 287 IPR001305 GO:0031072|GO:0051082
Gabi2860g00001 444 ProSitePatterns Nt-dnaJ domain signature. 133 152 IPR018253 -
Gabi2860g00001 444 FunFam Chaperone protein dnaJ 1, mitochondrial 333 439 - -
Gabi2860g00001 444 CDD DnaJ_C 198 415 - -
Gabi2860g00001 444 PANTHER DNAJ HOMOLOG 1, MITOCHONDRIAL-RELATED 52 436 - -
Gabi2860g00001 444 CDD DnaJ 91 145 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2860g00001 Gabi-Chr2860 4879 11463 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2860g00001 84 153 C2H2 Transcription Factor Family AT1G74250 42.667 1.79e-08 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2860g00001 K03686 - gmx:100799735 777.319