Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2859g00017 ATGTCTTCCGCGGCCGGCGCCGGAGTTAAGCCGTTCTTCTGCCACTTATGCAATCAGAGAGTTACCTGCTCCGATGATTCCGATCCTTTCTGCCCGATCTGCCTCCAAGGTTTCGTCGAAGAAGACAACTCTAATCCCAACCCTAACCCTAACCCTAACCCTACTGCTGTTTCATTCCGTTTCATCCCCGACCCTTCTTCTGACCCACATTTACCCTTTCATCCTCTCTCCCTTCTCCCTCTGTTGTTATCCTCCGCTTCATCCACCACCATTGATCTCCAGAACCCTCATTTCTTCTCGAATTCTCCTGGATCCAGGACCCGCCCCGATTTCCCTGAACGCGACACGTTCGACCCGTTCCTCTTCCTCCAGAACCACCTTCAGGGCCTTCGCGCCGAGGGGGCTAATGTTCAATTCGAGATTAATCACCCTTCCGAACCGGGGTTTCGCCTCCCAGCCAACATCGGGGATTACTTCGTCGGCCCTGGCCTCGAGCAATTGATCCAGCAGCTGGCCGAGAATGACCCGAACCGTTACGGGACGCCTCCGGCATCCAAAGACGCCGTTGCAAAACTTCCGACCGTAACCGTTGATGACGAGTTGTTGAACTCGGAATTGAACCAGTGCGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCGAAGGTAAAGCAAATGCCTTGCAAGCACGTGTACCATGATGGGTGCTTGCTTCCCTGGCTTGAATTGCATAACTCTTGCCCTGTGTGTCGATATGAATTGCCCACCGACGATGCCGATTCTGGGAATCGGACGCAGGGGAACGCTGGTGATGGGTCGAGGTCTGCTGGTAATGTTAATGGCAGCAGCGGGGGTGGTGGTGCTGGCAGCGGTGGCGGTGTGGAGAATAGACCTGCCCGCAGGACTTTCAGAATATCTTTGAGGTATCCTTTTGGTGCAGGTGGCTCTGCTCAGGACAGTGGTGAAAGGGGATGGGAAACTAGGCAAGAAGATTTGGATTGA 999 0.5425 MSSAAGAGVKPFFCHLCNQRVTCSDDSDPFCPICLQGFVEEDNSNPNPNPNPNPTAVSFRFIPDPSSDPHLPFHPLSLLPLLLSSASSTTIDLQNPHFFSNSPGSRTRPDFPERDTFDPFLFLQNHLQGLRAEGANVQFEINHPSEPGFRLPANIGDYFVGPGLEQLIQQLAENDPNRYGTPPASKDAVAKLPTVTVDDELLNSELNQCAVCQDEFEKGSKVKQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDADSGNRTQGNAGDGSRSAGNVNGSSGGGGAGSGGGVENRPARRTFRISLRYPFGAGGSAQDSGERGWETRQEDLD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2859g00017 332 MobiDBLite consensus disorder prediction 258 284 - -
Gabi2859g00017 332 MobiDBLite consensus disorder prediction 254 332 - -
Gabi2859g00017 332 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 108 254 - -
Gabi2859g00017 332 SMART ring_2 209 249 IPR001841 -
Gabi2859g00017 332 FunFam E3 ubiquitin-protein ligase RING1-like 170 256 - -
Gabi2859g00017 332 Pfam zinc-ribbon 12 41 IPR039525 GO:0061630
Gabi2859g00017 332 SUPERFAMILY RING/U-box 189 256 - -
Gabi2859g00017 332 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 171 256 IPR013083 -
Gabi2859g00017 332 Pfam Ring finger domain 207 250 IPR001841 -
Gabi2859g00017 332 CDD RING-H2_RNF126-like 208 250 - -
Gabi2859g00017 332 ProSiteProfiles Zinc finger RING-type profile. 209 250 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2859g00017 Gabi-Chr2859 89699 92217 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2859g00017 153 259 C3H Transcription Factor Family AT5G01980 48.598 4.42e-30 117
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2859g00017 K11982 - gmx:100785289 379.407