Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Gabi2859g00017 | ATGTCTTCCGCGGCCGGCGCCGGAGTTAAGCCGTTCTTCTGCCACTTATGCAATCAGAGAGTTACCTGCTCCGATGATTCCGATCCTTTCTGCCCGATCTGCCTCCAAGGTTTCGTCGAAGAAGACAACTCTAATCCCAACCCTAACCCTAACCCTAACCCTACTGCTGTTTCATTCCGTTTCATCCCCGACCCTTCTTCTGACCCACATTTACCCTTTCATCCTCTCTCCCTTCTCCCTCTGTTGTTATCCTCCGCTTCATCCACCACCATTGATCTCCAGAACCCTCATTTCTTCTCGAATTCTCCTGGATCCAGGACCCGCCCCGATTTCCCTGAACGCGACACGTTCGACCCGTTCCTCTTCCTCCAGAACCACCTTCAGGGCCTTCGCGCCGAGGGGGCTAATGTTCAATTCGAGATTAATCACCCTTCCGAACCGGGGTTTCGCCTCCCAGCCAACATCGGGGATTACTTCGTCGGCCCTGGCCTCGAGCAATTGATCCAGCAGCTGGCCGAGAATGACCCGAACCGTTACGGGACGCCTCCGGCATCCAAAGACGCCGTTGCAAAACTTCCGACCGTAACCGTTGATGACGAGTTGTTGAACTCGGAATTGAACCAGTGCGCGGTTTGTCAGGACGAGTTCGAGAAGGGTTCGAAGGTAAAGCAAATGCCTTGCAAGCACGTGTACCATGATGGGTGCTTGCTTCCCTGGCTTGAATTGCATAACTCTTGCCCTGTGTGTCGATATGAATTGCCCACCGACGATGCCGATTCTGGGAATCGGACGCAGGGGAACGCTGGTGATGGGTCGAGGTCTGCTGGTAATGTTAATGGCAGCAGCGGGGGTGGTGGTGCTGGCAGCGGTGGCGGTGTGGAGAATAGACCTGCCCGCAGGACTTTCAGAATATCTTTGAGGTATCCTTTTGGTGCAGGTGGCTCTGCTCAGGACAGTGGTGAAAGGGGATGGGAAACTAGGCAAGAAGATTTGGATTGA | 999 | 0.5425 | MSSAAGAGVKPFFCHLCNQRVTCSDDSDPFCPICLQGFVEEDNSNPNPNPNPNPTAVSFRFIPDPSSDPHLPFHPLSLLPLLLSSASSTTIDLQNPHFFSNSPGSRTRPDFPERDTFDPFLFLQNHLQGLRAEGANVQFEINHPSEPGFRLPANIGDYFVGPGLEQLIQQLAENDPNRYGTPPASKDAVAKLPTVTVDDELLNSELNQCAVCQDEFEKGSKVKQMPCKHVYHDGCLLPWLELHNSCPVCRYELPTDDADSGNRTQGNAGDGSRSAGNVNGSSGGGGAGSGGGVENRPARRTFRISLRYPFGAGGSAQDSGERGWETRQEDLD | 332 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Gabi2859g00017 | 332 | MobiDBLite | consensus disorder prediction | 258 | 284 | - | - | |
Gabi2859g00017 | 332 | MobiDBLite | consensus disorder prediction | 254 | 332 | - | - | |
Gabi2859g00017 | 332 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE PRAJA | 108 | 254 | - | - | |
Gabi2859g00017 | 332 | SMART | ring_2 | 209 | 249 | IPR001841 | - | |
Gabi2859g00017 | 332 | FunFam | E3 ubiquitin-protein ligase RING1-like | 170 | 256 | - | - | |
Gabi2859g00017 | 332 | Pfam | zinc-ribbon | 12 | 41 | IPR039525 | GO:0061630 | |
Gabi2859g00017 | 332 | SUPERFAMILY | RING/U-box | 189 | 256 | - | - | |
Gabi2859g00017 | 332 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 171 | 256 | IPR013083 | - | |
Gabi2859g00017 | 332 | Pfam | Ring finger domain | 207 | 250 | IPR001841 | - | |
Gabi2859g00017 | 332 | CDD | RING-H2_RNF126-like | 208 | 250 | - | - | |
Gabi2859g00017 | 332 | ProSiteProfiles | Zinc finger RING-type profile. | 209 | 250 | IPR001841 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Gabi2859g00017 | Gabi-Chr2859 | 89699 | 92217 | Proximal |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Gabi2859g00017 | 153 | 259 | C3H Transcription Factor Family | AT5G01980 | 48.598 | 4.42e-30 | 117 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Gabi2859g00017 | K11982 | - | gmx:100785289 | 379.407 |