Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2859g00012 ATGGAAAACGACACCACCACCGCCACCACCAATAACACCACCGCAACCGACAATAACACCACCGCCACCACCAAAGTGGGTTCAGGAGGTGGAGGAGAAGTCAAATCCAACAATCAAAGCCCTGAAGAAGAAATTTCTAATTTGAATGGCGAGGAACACATGCAAGAACAAGTGGAAGAACAAGAAGAAGATCGAGATGAAGATGATGAAGAACCAACTGGATCTGTACCCACCGCACGCCAACCTTCAAGAACCCCTTTCGCTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTTGCCCGAACCCTTCAGGAACAGGAAAGAGCATATATGATGCTGAGACTGAATAATGAAGGAAGCGACTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGACGGCACTGATGTGGATGAGGATGAGGATGAGGATGAGGATGAAGATGATAATGAGGAGGAATATGAGAATGAAGATGCATTTGATGTCAACGCTCATGGTAGTGCCGGAGAACATGATAATCCCATCATTGAGTATGACCCAGATGTATTTTCAAATGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGTTGAGGACACAGATGAGCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGAACTACTTGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTGCCTTCGGTGAAGTACAAGACCGGGAGTGATCAACATGGAAGCAGTGATTCGTGCGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTTTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCGTCTGGGAGCAGCTTGTAG 1035 0.4628 MENDTTTATTNNTTATDNNTTATTKVGSGGGGEVKSNNQSPEEEISNLNGEEHMQEQVEEQEEDRDEDDEEPTGSVPTARQPSRTPFANLSQVDADLALARTLQEQERAYMMLRLNNEGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDEDEDDNEEEYENEDAFDVNAHGSAGEHDNPIIEYDPDVFSNDEAYARALQEAEEREMAARLLALAGINDREVEDTDEHGANSQDAWEDVDPDELSYEELLALGEVVGTESRGLSTDTIACLPSVKYKTGSDQHGSSDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSSL 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 119 168 - -
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 139 168 - -
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 56 71 - -
Gabi2859g00012 344 FunFam E3 ubiquitin ligase BIG BROTHER-related 259 340 - -
Gabi2859g00012 344 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 37 342 IPR043312 -
Gabi2859g00012 344 SUPERFAMILY RING/U-box 285 338 - -
Gabi2859g00012 344 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 258 340 IPR013083 -
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 1 90 - -
Gabi2859g00012 344 Pfam Ring finger domain 291 333 IPR001841 -
Gabi2859g00012 344 Coils Coil 147 167 - -
Gabi2859g00012 344 ProSiteProfiles Zinc finger RING-type profile. 293 334 IPR001841 -
Gabi2859g00012 344 Coils Coil 51 71 - -
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 1 45 - -
Gabi2859g00012 344 SMART ring_2 293 333 IPR001841 -
Gabi2859g00012 344 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2859g00012 Gabi-Chr2859 50755 62610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2859g00012 73 237 C3H Transcription Factor Family AT3G19910 48.503 6.90e-37 131
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2859g00012 K19045 - gmx:100306465 451.825