Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2859g00011 ATGGAAAACGACACCACCACCGCCACCACCAATAACACCACCGCAACCGACAATAACACCACCGCCACCACCAAAGTGGGTTCAGGAGGTGGAGGAGAAGTCAAATCCAACAATCAAAGCCCTGAAGAAGAAATTTCTAATTTGAATGGCGAGGAACACATGCAAGAACAAGTGGAAGAACAAGAAGAAGATCGAGATGAAGATGATGAAGAACCAACTGGATCTGTACCCACCGCACGCCAACCTTCAAGAACCCCTTTCGCTAATCTCAGCCAGGTCGATGCTGACCTCGCCCTTGCCCGAACCCTTCAGGAACAGGAAAGAGCATATATGATGCTGAGACTGAATAATGAAGGAAGCGACTATGGAAGTTGGGAAGGTGGAAGCTATTTGCATGATGATGGGGATGATTTTGATGATCTACATGACGGCACTGATGTGGATGAGGATGAGGATGAGGATGAGGATGAAGATGATAATGAGGAGGAATATGAGAATGAAGATGCATTTGATGTCAACGCTCATGGTAGTGCCGGAGAACATGATAATCCCATCATTGAGTATGACCCAGATGTATTTTCAAATGATGAAGCCTATGCAAGAGCATTACAAGAGGCTGAAGAGAGGGAAATGGCAGCTAGACTGTTGGCTCTTGCTGGGATAAATGATCGGGAGGTTGAGGACACAGATGAGCATGGTGCTAATTCTCAGGATGCATGGGAGGATGTTGATCCAGATGAACTTTCATATGAGGTGACTTTAATATATACCGGAAGTTTGTTTCATGCCCCACATCCTCCCTGTACACTTTCATCTCATGTTTTAATAGTAAGATTCAAATTATTTCAGGAACTACTTGCATTGGGTGAAGTAGTTGGAACTGAGAGCAGAGGTCTTTCAACTGATACTATTGCCTGTTTGCCTTCGGTGAAGTACAAGACCGGGAGTGATCAACATGGAAGCAGTGATTCGTGCGTCATTTGCCGGGTGGACTATGAGGATGGTGAGTCCTTGACAGTTCTTTCCTGCAAACATCTTTACCATCCTGAGTGCATTAACAACTGGTTGAAAATAAACAAGGTTTGCCCTGTTTGCAGTACTGAGGTATCTGCGTCTGGGAGCAGCTTGTAG 1131 0.4527 MENDTTTATTNNTTATDNNTTATTKVGSGGGGEVKSNNQSPEEEISNLNGEEHMQEQVEEQEEDRDEDDEEPTGSVPTARQPSRTPFANLSQVDADLALARTLQEQERAYMMLRLNNEGSDYGSWEGGSYLHDDGDDFDDLHDGTDVDEDEDEDEDEDDNEEEYENEDAFDVNAHGSAGEHDNPIIEYDPDVFSNDEAYARALQEAEEREMAARLLALAGINDREVEDTDEHGANSQDAWEDVDPDELSYEVTLIYTGSLFHAPHPPCTLSSHVLIVRFKLFQELLALGEVVGTESRGLSTDTIACLPSVKYKTGSDQHGSSDSCVICRVDYEDGESLTVLSCKHLYHPECINNWLKINKVCPVCSTEVSASGSSL 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2859g00011 376 PANTHER E3 UBIQUITIN LIGASE BIG BROTHER-RELATED 37 374 IPR043312 -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 119 168 - -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 139 168 - -
Gabi2859g00011 376 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 290 372 IPR013083 -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 56 71 - -
Gabi2859g00011 376 ProSiteProfiles Zinc finger RING-type profile. 325 366 IPR001841 -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 1 90 - -
Gabi2859g00011 376 Coils Coil 147 167 - -
Gabi2859g00011 376 SMART ring_2 325 365 IPR001841 -
Gabi2859g00011 376 FunFam E3 ubiquitin ligase BIG BROTHER-related 291 372 - -
Gabi2859g00011 376 Coils Coil 51 71 - -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 1 45 - -
Gabi2859g00011 376 Pfam Ring finger domain 323 365 IPR001841 -
Gabi2859g00011 376 SUPERFAMILY RING/U-box 317 370 - -
Gabi2859g00011 376 MobiDBLite consensus disorder prediction 76 90 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2859g00011 Gabi-Chr2859 50755 62610 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2859g00011 73 237 C3H Transcription Factor Family AT3G19910 48.503 1.99e-36 130
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2859g00011 K19045 - gmx:100306465 435.261