Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2856g00035 ATGGCGCTATGGATGGAAAATGGTTCTGAGCCCTTGACCGAAAAAGAGAAGGCAGACCTTGAAGCCATTACTGCACTCAAAGAATCTGCAGCCATTGAACTTAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGAGCAATCAATCAGAAAGCATTGAGTGACTCTGAAAACTCTATTCTTTTTGCAAATAGAGCTCATGTGAATTTGCTGCTAGGAAATCATAGACGTGCTCTCACTGATTCTCTGGAGGCACTCAAGTTGTGCCCCTCTAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTGCACTAAATTTGTTGGCTGAAGCACAAGACCATTGCCAAAAGGGTCTTCAGTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGAGAAGCAGGTTGGTATGAAGATATCAGAGAATGAGAAGCATGAAGCTGAAGTCTCTAAGGTTGTTGCAGAGACAAAGGAACTTGTGTCTGCAATAGAACATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGAGAACTTGCTGGATTAAGGAAACCTGTGTTAGACAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCGGAGGTTATGTCCAGTGACTTCATTGAGGATTTTTGTGAGACTGACATGTTTTCAGTTCACCTTGATATGATGTTTGCAGAAGACCAGCCGCTCCCATGGGATGTTGAAAACAATTACAAACGCGAATATATTGAAGTATACTATGAGGCTGATTCTGGACATTGTATATTTAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTTCTCACAGAGAAGGCGTTGGTGATGAAGAGAAAGATGCAATTGAGGGTTTTAAGCCAAACATGGGCTCCCCTAAATGGATCAGAGTAAATGAAAGGAGATCACTTCATGATGTTCTGAAAGAGCCTAATTGCATCATCCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATAGCAAGTTCAAAGCTGGAAAGTGGGTTCCTCCTAGTATATGA 1083 0.4118 MALWMENGSEPLTEKEKADLEAITALKESAAIELKEKGNQYVKMGKKHYSDAIDCYTRAINQKALSDSENSILFANRAHVNLLLGNHRRALTDSLEALKLCPSNIKAIYRAAKASLALNLLAEAQDHCQKGLQLDPNNEELKKLEKQVGMKISENEKHEAEVSKVVAETKELVSAIEHRGLKIGKAMYRELAGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMMFAEDQPLPWDVENNYKREYIEVYYEADSGHCIFKEKLLHCLLEGTAASHREGVGDEEKDAIEGFKPNMGSPKWIRVNERRSLHDVLKEPNCIIPGIPVFYVVSKRSSFYSKFKAGKWVPPSI 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2856g00035 360 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 357 - -
Gabi2856g00035 360 CDD CTWD_Cns1-like 170 352 - -
Gabi2856g00035 360 Coils Coil 141 161 - -
Gabi2856g00035 360 Pfam Cns1/TTC4 Wheel domain 201 268 IPR044059 GO:0051879
Gabi2856g00035 360 Gene3D Tetratricopeptide repeat domain 24 178 IPR011990 GO:0005515
Gabi2856g00035 360 SMART tpr_5 31 66 IPR019734 GO:0005515
Gabi2856g00035 360 SMART tpr_5 105 138 IPR019734 GO:0005515
Gabi2856g00035 360 SMART tpr_5 71 104 IPR019734 GO:0005515
Gabi2856g00035 360 SUPERFAMILY TPR-like 21 159 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2856g00035 Gabi-Chr2856 375001 379395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2856g00035 14 160 Calmodulin-binding Proteins AT3G25230 33.544 3.80e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2856g00035 K24927 - gmx:100783179 621.313