Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2856g00034 ATGGCGCTATGGATGGAAAATGGTTCTGAGCCCTTGACCGAAAAAGAGAAGGCAGACCTTGAAGCCATTACTGCACTCAAAGAATCTGCAGCCATTGAACTTAAGGAAAAGGGTAACCAATATGTGAAGATGGGTAAGAAGCATTACTCTGATGCCATTGATTGCTACACAAGAGCAATCAATCAGAAAGCATTGAGTGACTCTGAAAACTCTATTCTTTTTGCAAATAGAGCTCATGTGAATTTGCTGCTAGGAAATCATAGACGTGCTCTCACTGATTCTCTGGAGGCACTCAAGTTGTGCCCCTCTAATATAAAGGCAATTTATAGAGCTGCCAAAGCATCTCTTGCACTAAATTTGTTGGCTGAAGCACAAGACCATTGCCAAAAGGGTCTTCAGTTGGACCCCAATAATGAGGAATTGAAGAAGCTTGAGAAGCAGGTTGGTATGAAGATATCAGAGAATGAGAAGCATGAAGCTGAAGTCTCTAAGGTTGTTGCAGAGACAAAGGAACTTGTGTCTGCAATAGAACATAGAGGCTTGAAGATTGGAAAGGCAATGTATCGAGAACTTGCTGGATTAAGGAAACCTGTGTTAGACAAAAGTAATATCCTTCATTGGCCTGTTCTTCTTCTGTATGCGGAGGTTATGTCCAGTGACTTCATTGAGGATTTTTGTGAGACTGACATGTTTTCAGTTCACCTTGATATGATGTTTGCAGAAGACCAGCCGCTCCCATGGGATGTTGAAAACAATTACAAACGCGAATATATTGAAGTATACTATGAGGCTGATTCTGGACATTGTATATTTAAGGAAAAACTTCTTCATTGTCTATTAGAGGGAACTGCAGCTTCTCACAGAGAAGGCGTTGGTGATGAAGAGAAAGATGCAATTGAGGGCTCCCCTAAATGGATCAGAGTAAATGAAAGGAGATCACTTCATGATGTTCTGAAAGAGCCTAATTGCATCATCCCTGGGATCCCAGTCTTCTATGTTGTTTCTAAGCGATCCAGCTTTTATAGCAAGTTCAAAGCTGGAAAGTGGGTTCCTCCTAGTATATGA 1065 0.4122 MALWMENGSEPLTEKEKADLEAITALKESAAIELKEKGNQYVKMGKKHYSDAIDCYTRAINQKALSDSENSILFANRAHVNLLLGNHRRALTDSLEALKLCPSNIKAIYRAAKASLALNLLAEAQDHCQKGLQLDPNNEELKKLEKQVGMKISENEKHEAEVSKVVAETKELVSAIEHRGLKIGKAMYRELAGLRKPVLDKSNILHWPVLLLYAEVMSSDFIEDFCETDMFSVHLDMMFAEDQPLPWDVENNYKREYIEVYYEADSGHCIFKEKLLHCLLEGTAASHREGVGDEEKDAIEGSPKWIRVNERRSLHDVLKEPNCIIPGIPVFYVVSKRSSFYSKFKAGKWVPPSI 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2856g00034 354 CDD CTWD_Cns1-like 170 346 - -
Gabi2856g00034 354 PANTHER TETRATRICOPEPTIDE REPEAT PROTEIN 4 14 351 - -
Gabi2856g00034 354 Coils Coil 141 161 - -
Gabi2856g00034 354 Pfam Cns1/TTC4 Wheel domain 201 268 IPR044059 GO:0051879
Gabi2856g00034 354 SUPERFAMILY TPR-like 21 159 IPR011990 GO:0005515
Gabi2856g00034 354 SMART tpr_5 31 66 IPR019734 GO:0005515
Gabi2856g00034 354 SMART tpr_5 105 138 IPR019734 GO:0005515
Gabi2856g00034 354 SMART tpr_5 71 104 IPR019734 GO:0005515
Gabi2856g00034 354 Gene3D Tetratricopeptide repeat domain 24 178 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2856g00034 Gabi-Chr2856 375001 379395 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2856g00034 14 160 Calmodulin-binding Proteins AT3G25230 33.544 4.54e-10 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2856g00034 K24927 - gmx:100783179 610.142