Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2856g00033 ATGGCTGCGCTAACCTGCTCCGTCGGTGACCTCCAGTCTCTTCTTGGCAATGTCAATGGCAGTGCCGCTGCTGAATACATATGTGAACATTTTGATGCTATTTCAAACAAGTTTGTTGACACCACCAATGCTGTGGACAAAACCTACCTTCTCTTCTCTGCGTACATGGTCTTTGCCATGCAACTTGGCTTTGCCATGCTATGTGCTGGTTCTGTACGTGCCAAGAACACCATGAACATCATGTTAACCAATGTCCTTGATGCTGCAACTGGTGGTATCTTTTACTATCTCTTTGGTTTTGCCTTGGCTTTTGGCACCCCATCAAATGGTTTCATAGGGACACACTTCTTTGGCCTTGAGAAGTTCCCTTCTAAGGATTTTGACTATGCTTTCTTTCTTTTTCAATGGGCTTTTGCCATTGCAGCTGCTGGTATCACCAGTGGTTCCATTGCTGAGAGGACACAGTTTGTTGCATATTTGATATACTCTTCCTTCTTGACTGGTTTGGTTTACCCTGTTGTTTCTCATTGGTTCTGGTCTGGTGATGGTTTTGGAAGCCCTGCAAGGTCTAAAGATTTGTTATTTGGAACTGGGGTCATTGATTTTGCTGGTTCAGGTGTGGTGCACTTGGTTGGTGCAGTTGCTGGCTTCTGGGGTGCTTTCATTGAAGGACCTCGTATTGGAAGGTTTGATCATGAGGGAAGACCTGTGGCAATGAGAGGACATAGTGGTACTTTGGTTGTTTTGGGAACGTTCTTGTTGTGGTTTGGTTGGTATGGATTCAACCCTGGTTCGTTTCTTAACATCTTGAAGGTGTATGGTGAGAGTGGTTCTTACTATGGGCAATGGAGTGCTGTTGGGAGGACTGCAGTGACCACAACTCTTGCTGGATGCTCAGCAGCATTGACAACCCTCTTTGGAAAACGTTTACAAACTGGGCATTGGAATGTCACAGATGTTTGCAATGGTTTGCTTGGTGGGTTTGCTGCAATCACTGCAGGGTGTTCTGTGGTGGATCCATGGGCAGCAATTATATGTGGGTTTGTGGCTGCTTGGGTTCTCATTGGATGTAATGTGTTAGCTGAGAAATTCAAGTATGATGATCCATTGGAGGCTGTGCAACTTCATGGTGGTTGTGGCTCTTGGGGGATAATCTTCACTGCATTGTTTGCTAATAAGCAGTATGTGAATGAGGTCTATGGAGGGTTACCTGATAGGCCACATGGGTTGTTCATGGGAGGAGGTGGAAAGCTTTTGGCTGCTCATCTTATTCAGATTTTGGTGATCATAGCTTGGGTGAGTGTTACCATGGGAACCTTGTTCTTTTTGTTGCACAAATTGAATCTACTGAGGATCTCAGCTGATGAGGAGATGGCTGGATTGGATTTAACCAGCCATGGTGGATTGGCATATGTGTATCATCATGAAGAGCTTGAGCTGGCCCAGAAACGTGCATTTGGAGAAACAAAGACAGATTCTTCTGCTGTTTGA 1491 0.452 MAALTCSVGDLQSLLGNVNGSAAAEYICEHFDAISNKFVDTTNAVDKTYLLFSAYMVFAMQLGFAMLCAGSVRAKNTMNIMLTNVLDAATGGIFYYLFGFALAFGTPSNGFIGTHFFGLEKFPSKDFDYAFFLFQWAFAIAAAGITSGSIAERTQFVAYLIYSSFLTGLVYPVVSHWFWSGDGFGSPARSKDLLFGTGVIDFAGSGVVHLVGAVAGFWGAFIEGPRIGRFDHEGRPVAMRGHSGTLVVLGTFLLWFGWYGFNPGSFLNILKVYGESGSYYGQWSAVGRTAVTTTLAGCSAALTTLFGKRLQTGHWNVTDVCNGLLGGFAAITAGCSVVDPWAAIICGFVAAWVLIGCNVLAEKFKYDDPLEAVQLHGGCGSWGIIFTALFANKQYVNEVYGGLPDRPHGLFMGGGGKLLAAHLIQILVIIAWVSVTMGTLFFLLHKLNLLRISADEEMAGLDLTSHGGLAYVYHHEELELAQKRAFGETKTDSSAV 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2856g00033 496 Gene3D Ammonium transporter AmtB like domains 25 487 IPR029020 -
Gabi2856g00033 496 FunFam Ammonium transporter 27 486 - -
Gabi2856g00033 496 PANTHER AMMONIUM TRANSPORTER 23 475 - -
Gabi2856g00033 496 SUPERFAMILY Ammonium transporter 42 452 - -
Gabi2856g00033 496 ProSitePatterns Ammonium transporters signature. 201 226 IPR018047 GO:0008519|GO:0016020|GO:0072488
Gabi2856g00033 496 Pfam Ammonium Transporter Family 49 471 IPR024041 GO:0008519|GO:0016020|GO:0072488
Gabi2856g00033 496 NCBIfam ammonium transporter 46 471 IPR001905 GO:0008519|GO:0016020|GO:0072488
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2856g00033 Gabi-Chr2856 371858 373348 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2856g00033 4 495 Inorganic Solute Cotransporters AT4G13510 73.092 0.0 741
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2856g00033 K03320 - qsa:O6P43_006828 829.706