Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2856g00031 ATGGCAACTCAAGGACAAGTTATTACCTGCAAAGCCGCGGTGGCATGGGAACCCAATAAGTCATTGACCATCGAGGATGTTCAGGTGGCTCCGCCGCAGGCTGGGGAGGTCCGAATCCAAATTCTCTACACTGCTCTCTGTCACACCGATGCTTATACTTGGAGTGGCAAGGATCCAGAAGGTCTCTTCCCATGTATACTTGGTCATGAGGCTGCTGGGATTGTAGAAAGTGTTGGAGAAGGTGTTAATGATGTTCAGCCTGGAGATCATGTCATCCCATGTTACCAGGCTGAATGTGGAGAGTGCAAGTTTTGCAAATCCGGCAAAACCAATCTTTGTGGCAAAGTTCGTTCAGCCACTGGAGTTGGGGTCATGCTGAGCGATCTCAAGAGTCGTTTCTCTATAAATGGGAAGTCCATCTATCATTTTATGGGAACCTCCACGTTTAGTCAATATACTGTTGTTCATGATGTTAGTGTAGCTAAGATTGATTCAAAAGCTCCTTTGGAGAAAGTTTGTCTTCTTGGATGTGGTGTTCCAACTGGACTTGGAGCTGTCTGGAACACTGCAAAGGTGGAACCAGGGTCAATTGTAGCTGTTTTTGGCCTTGGAACTGTTGGGCTTGCTGTTGCAGAGGGAGCAAAAGCTGCTGGTGCATCACGGATTATTGGCATAGATGTTGATAGCAATAAGTTTGAAAGAGCAAAGAACTTTGGAGTCACTGAGTTTATTAATCCAAAAGAACACGAGAAACCAATTCAGCAGGTCATAGTTGATCTCACAGATGGTGGAGTTGATTATAGTTTTGAGTGCATTGGAAATGTCTCAGTGATGAGGGCTGCTTTGGAATGCTGCCATAAGGGTTGGGGGACATCAGTTATAGTAGGTGTTGCAGCATCAGGACAGGAAATATCAACTCAACCTTTTCAGTTGGTGACTGGACGTGTCTGGAAAGGAACAGCTTTTGGTGGCTTCAAGAGTAGGTCACAAGTGCCTTGGCTTGTAGACAAGTACTTGAAGAAGGAAATCAAGGTTGATGAGTACATTACCCACAATTTGACTCTTGCGGATATCAACAAGGCATTTGACCTTATGCATGAAGGAGGCTGTCTCCGTTGTGTGCTTGCTATGCATGTGTCGGTGGTGGCTTTGAAAGTTTTGCGTGGGATAGAAGTGTCACCCTTCTTTTTCTTTTCCCTCTTGTGGTGA 1209 0.4541 MATQGQVITCKAAVAWEPNKSLTIEDVQVAPPQAGEVRIQILYTALCHTDAYTWSGKDPEGLFPCILGHEAAGIVESVGEGVNDVQPGDHVIPCYQAECGECKFCKSGKTNLCGKVRSATGVGVMLSDLKSRFSINGKSIYHFMGTSTFSQYTVVHDVSVAKIDSKAPLEKVCLLGCGVPTGLGAVWNTAKVEPGSIVAVFGLGTVGLAVAEGAKAAGASRIIGIDVDSNKFERAKNFGVTEFINPKEHEKPIQQVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTQPFQLVTGRVWKGTAFGGFKSRSQVPWLVDKYLKKEIKVDEYITHNLTLADINKAFDLMHEGGCLRCVLAMHVSVVALKVLRGIEVSPFFFFSLLW 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2856g00031 402 PANTHER ALCOHOL DEHYDROGENASE 5 375 - -
Gabi2856g00031 402 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 68 82 IPR002328 GO:0008270|GO:0016491
Gabi2856g00031 402 Gene3D - 182 320 - -
Gabi2856g00031 402 CDD alcohol_DH_class_III 8 375 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gabi2856g00031 402 SUPERFAMILY GroES-like 326 375 IPR011032 -
Gabi2856g00031 402 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 168 341 IPR036291 -
Gabi2856g00031 402 FunFam S-(hydroxymethyl)glutathione dehydrogenase 13 201 - -
Gabi2856g00031 402 NCBIfam S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase 10 377 IPR014183 GO:0006069|GO:0008270|GO:0051903
Gabi2856g00031 402 Pfam Zinc-binding dehydrogenase 206 330 IPR013149 -
Gabi2856g00031 402 Pfam Alcohol dehydrogenase GroES-like domain 35 162 IPR013154 -
Gabi2856g00031 402 SUPERFAMILY GroES-like 3 198 IPR011032 -
Gabi2856g00031 402 Gene3D - 13 372 - -
Gabi2856g00031 402 FunFam S-(hydroxymethyl)glutathione dehydrogenase 182 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2856g00031 Gabi-Chr2856 366099 371375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2856g00031 10 331 Monolignol Biosynthesis Gene Families AT1G72680 26.911 7.56e-16 76.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2856g00031 K00121 - jre:109020766 723.005