Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2856g00023 TATGGGCCATCTTCTGCTCTTGTGCCATCTCCATCTTATCAAGTTCCTAGTGTGACTCCAAGACCAAAAAATCATGATCATCACCATCGTCATCAAACTGTAAAACCTTATGCTGTGGCTCCATCCCCTTTTGAAGATCAAGCTTGTGGCCAAATCTGTACGGATCCTCTCACAGCAACTCCCTTTTATTCACCTTGTGGTTGTGTATTTCCCATGAAAATCAGACTTGTACTGGATACAGCTCCTTTGGTTGTTTTTCCATTAATTAATGAGTTAGAGATTGAAGTTGCATCTGGAACATATTTGAAGCAGAGCCAGGTGAGGATAATGGGAGTAAGTGCTGATAGTCAAAATCAGGGAAGAACTGTGGTTGATATTAACTTGGTTCCACTTGGAGAGAAATTTGAGAATACCACTGCAGTTCTGACATACAAGAGGTTTTGGCACAAGAAAGTTCCTCTAAATAGGAGCCTTTTTGGTGATTATGCGGTCTTGTACATTACTTATCCAGGGATGCCATCATTGTTGCCACATGGAACCTTAGTTGGGAGTGGTCCCTTTGGCGGTGAAAGTGTTGATGGGATTATCCCAATCACTCCTAGTGAAAGTTCTGAAGGGATTCTCCCAATCACTGCCAACATCAGCAAGAATGAGAAAATGAATCTTAGAACTATAATCATCATTGCTTTATCTTTCTTTGTACTCTTACTGGTTTTGGTTGGAGCGTTTTCCCTTGTTTTGAAATGGAGGAGAATTAGGAGACCGTCAAGTTCTGCATTCACATTGTCTCGAAACAAGAAATCTGCCATGGAGTCTATGTTGTCAAGCAGAATTACGAGCTCAAGATCAATGTCCCTTGTGTCCACCATGGCTACTTATATTCGCTCTGTTAAAACATTTTCCTTTTCTGAGCTTGAGAAGGCAACTGATAAGTTCAATTCAAAGAGAATATTAGGAGAAGGAGGATTTGGACGTGTTTATTGCGGGACATTGGATGATGGAACTGAAGTTGCAGTTAAGCTGCTAACAAGGGATAATCAGAATGGAGACAGTGAATTTATTGCAGAAGTTGAGATACTAAGCCGTATGCATCATCGTAATCTTGTGAAACTCGTCGGTATATGCATAGAACGTCGCAGGCGATGCTTGGTGTATGAGCTTGTTCGCAATGGCAGTGTCGAGTCCCATTTGCATGGAGTTGACAAGACAAGCAGCCCTCTAGATTGGGAAACACGGACAAAAATTGCCCTTGGAGCTGCGAGAGGATTGGCCTATCTTCATGAGGATTCTATTCCTCGTGTAATTCACCGAGACTTTAAAGCTAGCAACGTGTTGCTGGAAGATGACTTTACACCCAAGGTTTCTGATTTTGGATTAGCAAGAGAAGCAACTGAAGGAAGTCATCATATTTCTACAAGGGTCATGGGTACTTTTGGGTATGTTGCCCCGGAATATGCAATGACGGGTCATTTACTTGTTAAAAGTGATGTTTATAGTTATGGCGTTGTGTTGCTTGAACTTCTAACAGGCAGAAAACCAGTGGACATGTCTCGACCTCCTGGACAGGAGAATCTTGTAATATGGGCACGACCTCTGTTGACAAGTAGAGAAGGTTTGAAACAGCTGGTGGATCCATCATTGGCTGGAAGTTATGACTTTGATGACATGGCAAAGGTGGCTGGTATTGCTTCAATGTGTGTACACCCGGAGGTCACTCAGAGACCTTTCATGGGTGAAGTTGTGCAGGCTCTTAAGTTGATATACGATGACGGTGATGAGACCTTTGTGGATTGTTGTAGTCGGAAGGACTCTTCTGATTTTAGAGGTGACCTTGCCTTTTCTGATAGCAGTTGGGACAATGCTGACGGGGTAAACCCACGATTAGCTTATGGGCAAGCATCTTCCTTGGTCACGATGGAATACAGTTCTGGTCCACTTGAAATGGAAAACAGACCGTTTTCAGCTTCAAGCTTGATTGGAGATGACATATCTTTACCAATTAGGCATGGGAATAGATCAGGTCCCTTGAGAACAGCCCGAAGCAAGCTATCCTTTTATCGGCTTACTCGAAGTTGGAGTGAGCATGCAGTACTTCCATCCAAACGTGTTTGGAATGATGGTTAA 2124 0.4289 YGPSSALVPSPSYQVPSVTPRPKNHDHHHRHQTVKPYAVAPSPFEDQACGQICTDPLTATPFYSPCGCVFPMKIRLVLDTAPLVVFPLINELEIEVASGTYLKQSQVRIMGVSADSQNQGRTVVDINLVPLGEKFENTTAVLTYKRFWHKKVPLNRSLFGDYAVLYITYPGMPSLLPHGTLVGSGPFGGESVDGIIPITPSESSEGILPITANISKNEKMNLRTIIIIALSFFVLLLVLVGAFSLVLKWRRIRRPSSSAFTLSRNKKSAMESMLSSRITSSRSMSLVSTMATYIRSVKTFSFSELEKATDKFNSKRILGEGGFGRVYCGTLDDGTEVAVKLLTRDNQNGDSEFIAEVEILSRMHHRNLVKLVGICIERRRRCLVYELVRNGSVESHLHGVDKTSSPLDWETRTKIALGAARGLAYLHEDSIPRVIHRDFKASNVLLEDDFTPKVSDFGLAREATEGSHHISTRVMGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDMSRPPGQENLVIWARPLLTSREGLKQLVDPSLAGSYDFDDMAKVAGIASMCVHPEVTQRPFMGEVVQALKLIYDDGDETFVDCCSRKDSSDFRGDLAFSDSSWDNADGVNPRLAYGQASSLVTMEYSSGPLEMENRPFSASSLIGDDISLPIRHGNRSGPLRTARSKLSFYRLTRSWSEHAVLPSKRVWNDG 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2856g00023 707 CDD STKc_IRAK 318 587 - -
Gabi2856g00023 707 FunFam Receptor-like serine/threonine-protein kinase ALE2 388 604 - -
Gabi2856g00023 707 Gene3D Phosphorylase Kinase; domain 1 284 387 - -
Gabi2856g00023 707 Pfam Protein tyrosine and serine/threonine kinase 314 583 IPR001245 GO:0004672|GO:0006468
Gabi2856g00023 707 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Gabi2856g00023 707 MobiDBLite consensus disorder prediction 1 19 - -
Gabi2856g00023 707 ProSitePatterns Serine/Threonine protein kinases active-site signature. 434 446 IPR008271 GO:0004672|GO:0006468
Gabi2856g00023 707 PANTHER OS01G0750732 PROTEIN 47 601 - -
Gabi2856g00023 707 Gene3D Transferase(Phosphotransferase) domain 1 388 603 - -
Gabi2856g00023 707 SUPERFAMILY Protein kinase-like (PK-like) 295 584 IPR011009 -
Gabi2856g00023 707 MobiDBLite consensus disorder prediction 1 32 - -
Gabi2856g00023 707 ProSiteProfiles Protein kinase domain profile. 312 596 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2856g00023 707 FunFam receptor-like serine/threonine-protein kinase ALE2 285 387 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2856g00023 Gabi-Chr2856 275914 295709 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2856g00023 52 621 Receptor kinase-like Gene Family AT5G56890 54.237 0.0 624
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Gabi2856g00023 PK_Tyr_Ser-Thr 8.8e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2856g00023 - - gmx:100792309 1068.53