Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2853g00034 ATGGAGGTTATTGTGGCATCTTCGCATGGTGATGATGGAATAGGGTGCTGGGAGCTTGAGACAGGTGCTGAGCAGCTTCGCTATAAATTGTGTTCTTCACCTTCTCATGGCCTTGTCTCTGTGGGTAGTCGCTTCCTCGCTTCTTCTCAGATTCGAAACCCTTCAGAATCCTCTGGTTCTGTTTTCTTCTGGTCATGGTCCAAGCCTCAAGTTGAAGTTAAGAGTTTTCCTGCTGAACCCATTAAGCCCCTTGCTGCTAATCACCCTGGCACCTATCTTGCTGGTGGAGGTTTGTCTGGTAACATATACTTGTGGGAGGTTGAAACTGGCAAATTGCTTACGAAGTGGAAGGGTCATTTGAGGGCTGTTACTTGCCTGGTATTTTCTGAAGATGACTCACACCTGATATCTGGTTCTGAAGATGGGTGCATACGAGTTTGGTCTCTCTTCATGATATTTGATAGTTTGAGATGTGGGGAAGCCAATCCTCCAAGTGAGCATAGTTTTTCAGAGAACACCATGTGTGTAACTGATGTTGTGATTGGTTATGGAGGGTGCAATGCAATTATAGTGTCAGCTTCAGAGGATAGGACCTGTAAGGTATGGAGCTTATCTAAGGGAAAACTACTGAGAAATATAGTATTCCCTACAAAAATTCATGCCATTGCATTGGATCCTTCTGAACATGTCTTTTATGCTGGCAGTAGTGATGGAAGAATATTTATCGTTTCACTTAACACTAAAAGCGTTGCTACTAACAATTATTGGATGCATAGCGACAGTCAGGCAGTTACTTGCTTAGCATATGGCAGGAGCGGGAGTTTGTTAATATCTGGGTCAGAGGATGGAGTGGTTCGTGTTTGGGATGTGAGAAATCATAACATTGTTCGCATGTTTAAACATGCTAAAGGACCTGTAAATAATGTTATTGTTGTTAGACAAGAATTTGACTTAAGTAATAGTATATCTTCTAATGTACAAGCATCCTCAAGAAAGCATGGGGCTTATTTACCTCCATTGGAAAAATATGCGAACTCAACAGATGAAGACTCTGATCTAAAGACTGTTATCAGCCTTGGGGGTGGCAGGAGATGCGTGGATGTTTCATACCTCAGTTCTCATGTGATATCTAATTGCATTAAGGAACTTCAGCATCAAGGTTCACATGCTGCTTCTGAAATGGAGATGGAGAAACTAAAACATGATTACCAAAGGTCGATGCAAATGGTTAACCAATGGAAGAAAATGTACGCAAACTTGCATCAAATTTGTGTAGAGGTTGTGGTAGATGGTGATCAAGCTAGAACATTAGATGAAAATGACAAATAA 1329 0.4146 MEVIVASSHGDDGIGCWELETGAEQLRYKLCSSPSHGLVSVGSRFLASSQIRNPSESSGSVFFWSWSKPQVEVKSFPAEPIKPLAANHPGTYLAGGGLSGNIYLWEVETGKLLTKWKGHLRAVTCLVFSEDDSHLISGSEDGCIRVWSLFMIFDSLRCGEANPPSEHSFSENTMCVTDVVIGYGGCNAIIVSASEDRTCKVWSLSKGKLLRNIVFPTKIHAIALDPSEHVFYAGSSDGRIFIVSLNTKSVATNNYWMHSDSQAVTCLAYGRSGSLLISGSEDGVVRVWDVRNHNIVRMFKHAKGPVNNVIVVRQEFDLSNSISSNVQASSRKHGAYLPPLEKYANSTDEDSDLKTVISLGGGRRCVDVSYLSSHVISNCIKELQHQGSHAASEMEMEKLKHDYQRSMQMVNQWKKMYANLHQICVEVVVDGDQARTLDENDK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2853g00034 442 Pfam WD domain, G-beta repeat 176 203 IPR001680 GO:0005515
Gabi2853g00034 442 Pfam WD domain, G-beta repeat 110 148 IPR001680 GO:0005515
Gabi2853g00034 442 Pfam WD domain, G-beta repeat 258 289 IPR001680 GO:0005515
Gabi2853g00034 442 Gene3D - 160 423 IPR015943 GO:0005515
Gabi2853g00034 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 190 212 IPR001680 GO:0005515
Gabi2853g00034 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 116 149 - -
Gabi2853g00034 442 ProSitePatterns Trp-Asp (WD) repeats signature. 276 290 IPR019775 -
Gabi2853g00034 442 Gene3D - 2 159 IPR015943 GO:0005515
Gabi2853g00034 442 PRINTS G protein beta WD-40 repeat signature 135 149 IPR020472 -
Gabi2853g00034 442 PRINTS G protein beta WD-40 repeat signature 190 204 IPR020472 -
Gabi2853g00034 442 PRINTS G protein beta WD-40 repeat signature 276 290 IPR020472 -
Gabi2853g00034 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 257 292 - -
Gabi2853g00034 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 257 298 IPR001680 GO:0005515
Gabi2853g00034 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 116 149 IPR001680 GO:0005515
Gabi2853g00034 442 SUPERFAMILY WD40 repeat-like 5 311 IPR036322 GO:0005515
Gabi2853g00034 442 FunFam Protein ROOT INITIATION DEFECTIVE 3 1 242 - -
Gabi2853g00034 442 PANTHER WD-REPEAT PROTEIN 18 2 426 IPR045227 -
Gabi2853g00034 442 SMART WD40_4 69 106 IPR001680 GO:0005515
Gabi2853g00034 442 SMART WD40_4 162 203 IPR001680 GO:0005515
Gabi2853g00034 442 SMART WD40_4 109 148 IPR001680 GO:0005515
Gabi2853g00034 442 SMART WD40_4 206 244 IPR001680 GO:0005515
Gabi2853g00034 442 SMART WD40_4 246 289 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2853g00034 Gabi-Chr2853 394221 398144 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2853g00034 88 321 U-box Gene Family AT2G33340 25.738 8.91e-12 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2853g00034 K14829 - gmx:100791195 663.685