Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2853g00018 ATGGAGGATTCATTGGAGAATTGGGTTTCTCATTTGGAAATGGAAGATGATATCTTCAATCAAAGTCATAACTCAAGTCATGAGAACCAAGAGTTCATTAGAGAGATCCTTGAGCAGCCAAATTTCTCACCTGAAAGTGAATGTCCCTCCTTATATCATTGTTCCACAATCCAAAACAACAACACTACTGCTATAGGTATTGTTGAAGGAGGTGCTACTAGCCCCACCAAGAGCAATTTGTCCTTTGATGAGACAAGCTCTGATCATGGGAATGGAACCCTTCACAAAAGTAACAGCTCCAACTCCATCATGTCTTCTGAAAGATGTGGCTGTTCTCCATCCACATACCTTCTATCTTTTGATAACTCAAGTGTTGAACCAATCATCCATGAACCTTCCCCAAAGCATAATTCAGCATTTGGAACCAAAAAAAGGACTATAGGGAAAGAGGGGTTTGGATTTGAACCAAGTTTGCTCCAAGCAACAAAGAGGATTAGAAGGTCATCTGAAACAAAAGATCACATAATTGCTGAGAGGAAAAGGAGGCAGGAACTGACTCAGAACATCATAGCACTCTCAGCATCCATACCTGGGTTGAAGAAGATGGACAAGGCTTATGTACTTCGTGAAGCTGTCAATTACACGAAACAACTTCAAGAGCGTGTTAAAGAGCTGGAGAATCATAACAAAAATAAAAGAGTAGATTCAGCAATATGGATCAGGAAATCTCAAGCCTCATCAAATAAAAGCACCATCGATTGTGAAACGAACTCAGAATCACAACTTGAGGTTGAAGCAAGAGTCCTAGAGAAGGAAGTGCTTATTGGAATCCATTGTGAGAAACAAAAGGACATAGTGCCCAAAATACACGTCTTGCTTGAAAAGCTCCATCTCTCTATAACCAATAGTAGTGTATTACCATTTGGGACTTCTACTCTTATAATCAACATTATTGCTCAGATGGATGGAGAATACAGCATGAGCATGGATGACCTAGTGAAAAACCTGAGAGAAGATCTGTAG 1023 0.3998 MEDSLENWVSHLEMEDDIFNQSHNSSHENQEFIREILEQPNFSPESECPSLYHCSTIQNNNTTAIGIVEGGATSPTKSNLSFDETSSDHGNGTLHKSNSSNSIMSSERCGCSPSTYLLSFDNSSVEPIIHEPSPKHNSAFGTKKRTIGKEGFGFEPSLLQATKRIRRSSETKDHIIAERKRRQELTQNIIALSASIPGLKKMDKAYVLREAVNYTKQLQERVKELENHNKNKRVDSAIWIRKSQASSNKSTIDCETNSESQLEVEARVLEKEVLIGIHCEKQKDIVPKIHVLLEKLHLSITNSSVLPFGTSTLIINIIAQMDGEYSMSMDDLVKNLREDL 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2853g00018 340 Gene3D - 160 234 IPR036638 GO:0046983
Gabi2853g00018 340 MobiDBLite consensus disorder prediction 69 105 - -
Gabi2853g00018 340 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 169 218 IPR011598 GO:0046983
Gabi2853g00018 340 SMART finulus 175 224 IPR011598 GO:0046983
Gabi2853g00018 340 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 173 234 IPR036638 GO:0046983
Gabi2853g00018 340 Coils Coil 208 235 - -
Gabi2853g00018 340 PANTHER BHLH TRANSCRIPTION FACTOR 14 339 - -
Gabi2853g00018 340 Pfam Helix-loop-helix DNA-binding domain 174 219 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2853g00018 Gabi-Chr2853 209970 215212 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2853g00018 114 340 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 44.538 1.07e-45 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Gabi2853g00018 HLH 7.6e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2853g00018 - - aprc:113863851 434.106