LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Gabi2853g00002	ATGGGTGTGGCTCAAAACATTCTTGATGTGGAGGAGGGAACCTTGGAGATTGGAATGGAATATAGAACTGTGTCTGGGGTTGCTGGACCATTGGTTATTCTTGATAAAGTTAAGGGACCCAAATATCAAGAGATTGTTAATATTCGCTTAGGGGATGGAACTACTCGGCGTGGACAAGTTCTAGAAGTTGATGGTCAAAAAGCTGTTGTTCAGGTCTTTGAAGGTACATCTGGGATTGACAATAAATTTACAACTGTGCAATTCACCGGTGAGGTGTTAAAAACTCCTGTATCGCTGGATATGCTTGGCCGCATATTTAATGGTTCTGGAAAACCAATTGATAATGGTCCACCCATATTACCTGAGGCTTACTTGGACATATCAGGAAGTTCCATCAACCCTAGTGAGAGAACCTATCCAGAGGAGATGATACAGACAGGAATATCTACAATTGATGTCATGAATTCTATTGCAAGAGGTCAAAAGATCCCTCTATTCTCAGCTGCTGGTCTCCCCCATAATGAAATTGCTGCACAGATATGCCGTCAGGCTGGCTTAGTCAAGCGATTAGAGAAGTCTGATAATCTTCTTGAGGATGGAGAAGAGGACAATTTTGCCATTGTGTTTGCAGCTATGGGAGTTAACATGGAGACTGCTCAGTTTTTCAAACGCGACTTTGAGGAGAATGGCTCCATGGAGAGAGTGACCCTTTTCCTTAATCTGGCAAATGATCCTACAATTGAGCGTATCATTACTCCTCGTATTGCTCTTACTACTGCTGAATATTTAGCATATGAATGCGGCAAGCATGTTCTTGTGATACTCACAGATATGAGTTCTTATGCTGATGCTCTTCGTGAGGTATCTGCTGCCCGAGAAGAAGTACCAGGTAGACGTGGGTATCCTGGCTACATGTATACAGATCTTGCTACAATATACGAACGTGCTGGAAGAATTGAGGGTCGAAAAGGCTCTATTACGCAAATTCCAATTCTAACCATGCCAAATGATGATATTACGCATCCAACTCCTGATCTTACAGGATATATTACTGAGGGACAGATATATATTGACAGGCAACTGCATAACAGGCAGATATATCCACCAATCAATGTCCTTCCATCACTGTCTCGATTGATGAAGAGTGCCATTGGTGAGGGAATGACTCGAAGGGATCATGCTGATGTGTCCAACCAGCTCTATGCAAATTATGCCATTGGAAAGGATGTCCAGGCAATGAAAGCTGTGGTTGGAGAAGAAGCACTTTCATCTGAGGACCTGCTGTATCTGGAGTTTTTGGACAAGTTTGAGAGGAAGTTTGTCGCACAAGGAGCTTATGACACCCGGAATATCTTCCAGTCACTAGATCTTGCATGGACATTGCTTCGGATCTTCCCCCGCGAGCTTCTTCATCGTATACCAGCAAAGACTCTTGATCTGTACTACAACAGAGATGCTGGTAATTGA	1467	0.4315	MGVAQNILDVEEGTLEIGMEYRTVSGVAGPLVILDKVKGPKYQEIVNIRLGDGTTRRGQVLEVDGQKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPIDNGPPILPEAYLDISGSSINPSERTYPEEMIQTGISTIDVMNSIARGQKIPLFSAAGLPHNEIAAQICRQAGLVKRLEKSDNLLEDGEEDNFAIVFAAMGVNMETAQFFKRDFEENGSMERVTLFLNLANDPTIERIITPRIALTTAEYLAYECGKHVLVILTDMSSYADALREVSAAREEVPGRRGYPGYMYTDLATIYERAGRIEGRKGSITQIPILTMPNDDITHPTPDLTGYITEGQIYIDRQLHNRQIYPPINVLPSLSRLMKSAIGEGMTRRDHADVSNQLYANYAIGKDVQAMKAVVGEEALSSEDLLYLEFLDKFERKFVAQGAYDTRNIFQSLDLAWTLLRIFPRELLHRIPAKTLDLYYNRDAGN	488

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Gabi2853g00002	488	CDD	ATP-synt_V_A-type_beta_N	20	91	-	-
	Gabi2853g00002	488	FunFam	V-type proton ATPase subunit B, brain	29	488	-	-
	Gabi2853g00002	488	Gene3D	-	29	487	-	-
	Gabi2853g00002	488	PANTHER	V-TYPE PROTON ATPASE SUBUNIT B	6	485	IPR022879	-
	Gabi2853g00002	488	PIRSF	V-ATPsynth_beta/V-ATPase_B	12	488	IPR022879	-
	Gabi2853g00002	488	ProSitePatterns	ATP synthase alpha and beta subunits signature.	368	377	IPR020003	GO:0005524
	Gabi2853g00002	488	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	94	383	IPR027417	-
	Gabi2853g00002	488	Pfam	ATP synthase alpha/beta family, nucleotide-binding domain	147	377	IPR000194	GO:0005524
	Gabi2853g00002	488	CDD	V_A-ATPase_B	92	385	-	-
	Gabi2853g00002	488	NCBIfam	V-type ATPase subunit B	20	486	IPR005723	GO:0033180\|GO:0046961\|GO:1902600

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Gabi2853g00002	Gabi-Chr2853	11262	17784	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Gabi2853g00002	1	488	Primary Pumps ATPases(2)	AT4G38510	96.311	0.0	963

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Gabi2853g00002	K02147		-	oeu:111389279	943.725

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