Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2843g00020 ATGAGTGAAACACAGAACGACACCGTTACAGAAACAGAAACAGAGACAGCGTTGTCGACGACAAAGGACGAGGTGGCACCGGTTGTCGTTTTGTTCGGTAAATACGAGCTTCGGAGGTTGCTGGGAGTTGGTGCATCCGGCAAAGTCTACCACGCGACGAACTTGGACACTGGTCAGAGCGTGGCGGTGAAGGTTGTCAGCAAGCACAAGGTTCTCAACGGTGGCTTCGCCGCCAACGTTGAACGCGAGATCTCAATCATGCGCCGCCTCAACCACCCAAACATCGTTAACCTCTTCGAAGTCCTAGCCACCAAGACCAAGATTTACTTCGTCATGGAGTTTGCCTCCGGCGGCGAGCTCTTCAGCGAGGTCGCCGACAAGGGACGCCTGACGGAAGACCTAGGCCGGAGATATTTCCAGCAGCTAATCTCCGCCGTCAAGCACTGCCACTCCCAAAGCATCTTCCACCGCGACCTCAAGCTCGACAACCTCTTAATCGACGAAAACGGGAACCTAAAAGTCTCGGATTTCGGGTTGAGCGCAGTGGAGGATCAGATCCGACCCGACGGGTTGCTCCACACTGTTTGTGGGACCCCTACCTACGTGGCACCTGAGATTCTCGCGAAGAGAGGTTACGATGGTGAAAAAGTTGACGTCTGGTCATGCGGCGTCGTTTTGTACGCTCTCACCGCTGGGTATTTACCCTTCAATGACTACAATATTACGATCCTGTACAGAAAAATTTACCGCGGTCAATTTCGCTGCCCAAAATGGACGTCCAATGATCTGAGAAACCTCTTATCACGTTTGTTGGATCCGAATCCACAAACGAGGATAACGGTAGATGAGATTCTCCAAGACACGTGGTTCAAAACGGGTGGATACCGGCCCGACCGGGTTTTACTTAAGCAACCCGAGTGGGAGGAGGCTCGAACCGGGTTCAAGTCTTTGAACGCGTTTGATTTAATATCGTTTTCAAGCGGGTTGGACATGTCGGGTTTGTTTTCTGACCCGAGTGTGTTGGATACCGTGGAACGGGTCGTTTCAGGGGAGGAACCGGAGAGGATCATGGAGAAGGTGGAGGAGGTAGCGAACGGTGCAAGATTTACGGTGACGAGGAAGGGGAATGGAGGTGGGGCCAAGTTGGAAGGGCAGGATGGTAATTTGATTGCTCTCGTTGTGGTTTACCGGTTAACGGATGAGCTTGCGGTAGTTGAAGTGAAGAGTAATGAATGTGGCGCACAGTTTTGTAAAGATAAATTGTGCCCTCAACTTCTTGAATTAGCTCATAAACAGATAGCGCCGGTCTTCCGGTGA 1317 0.5171 MSETQNDTVTETETETALSTTKDEVAPVVVLFGKYELRRLLGVGASGKVYHATNLDTGQSVAVKVVSKHKVLNGGFAANVEREISIMRRLNHPNIVNLFEVLATKTKIYFVMEFASGGELFSEVADKGRLTEDLGRRYFQQLISAVKHCHSQSIFHRDLKLDNLLIDENGNLKVSDFGLSAVEDQIRPDGLLHTVCGTPTYVAPEILAKRGYDGEKVDVWSCGVVLYALTAGYLPFNDYNITILYRKIYRGQFRCPKWTSNDLRNLLSRLLDPNPQTRITVDEILQDTWFKTGGYRPDRVLLKQPEWEEARTGFKSLNAFDLISFSSGLDMSGLFSDPSVLDTVERVVSGEEPERIMEKVEEVANGARFTVTRKGNGGGAKLEGQDGNLIALVVVYRLTDELAVVEVKSNECGAQFCKDKLCPQLLELAHKQIAPVFR 438
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2843g00020 438 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 30 410 - -
Gabi2843g00020 438 FunFam Non-specific serine/threonine protein kinase 115 297 - -
Gabi2843g00020 438 SMART serkin_6 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00020 438 Gene3D Kinase associated domain 1, KA1 317 431 - -
Gabi2843g00020 438 ProSiteProfiles Protein kinase domain profile. 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00020 438 Pfam NAF domain 315 372 IPR004041 GO:0007165
Gabi2843g00020 438 CDD CIPK_C 318 425 - -
Gabi2843g00020 438 FunFam Aurora kinase A 30 118 - -
Gabi2843g00020 438 ProSiteProfiles NAF domain profile. 312 336 IPR018451 GO:0007165
Gabi2843g00020 438 Gene3D Transferase(Phosphotransferase) domain 1 28 316 - -
Gabi2843g00020 438 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Gabi2843g00020 438 Pfam Protein kinase domain 35 290 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00020 438 SUPERFAMILY Protein kinase-like (PK-like) 31 327 IPR011009 -
Gabi2843g00020 438 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2843g00020 Gabi-Chr2843 291903 293585 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2843g00020 30 429 CBL-interacting serine-threonine protein kinases AT2G30360 55.854 1.80e-159 456
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi2843g00020 Pkinase 2.6e-72 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2843g00020 - K12761 gmx:100810319 606.675