Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2843g00015 ATGGAACGGAAGGGAAGTGTGCTTATGCAGCGATATGAACTGGGGAAATTATTAGGCCAAGGAACCTTTGCAAAGGTCTACCATGCTAGGAACCTTGTAACTGGCATGAGTGTGGCCGTTAAGGTAATTGATAAAGAAAAGATTTTGAAAGTTGGGATGATTGATCAGATTAAGCGTGAAATTTCAGTGATGAAATTAGTCAGACATCCACATGTGGTTGAGCTTTATGAGGTAATGGCCAGTAAAACCAAAATTTACTTTATCATGGAGTATGCAAAAGGTGGCGAGCTCTTCGACAAGGTAGCCAAAGGAAAGCTCAAGGTGGATGTTGCTAGGAAATATTTTCAGCAACTCATTTGTGCAGTTGACTACTGCCACAGCAGGGGCGTGTCTCATCGAGATTTAAAACCTGAAAATCTACTATTGGATGAAAATGAGAATTTGAAGGTTTCAGACTTTGGGTTGAGTGCCATTGCTGAATCTAAGTGCCAAGATGGATTACTCCACACTACATGTGGTACCCCTGCCTATGTTGCTCCAGAAGTGATAAACAGAAAGGGTTATGATGGGAGCAAAGCTGATATATGGTCATGTGGGGTAATCTTGTATGTTCTATTGGCTGGTTATCTTCCATTCCAGGATTCAAATCTGATGGAGATGTACAGGAAAATAGGTAAAGGGGAATTCAAATTTCCTAAATGGTTTTCACCCGATGTTCGCCGGCTGTTGTCCAAAATCTTGGATCCAAACCCAAATACCAGGATATCAATGACCAATATCATGAAAAATTCTTGGTTTAGAACGGGGTTAGAGAAGCCTGTTATTATTGAAACCGAAAACAAAGGACTAGCTTCTCAGGATGCTGATGGAGCATTTGAAGCTAAGCCTTCTAATCTAAATGCTTTTGATATCATCTCCTTCTCAATTGGTTTTGATTTATCTGGTTTGTTTGAGGACACTCTTCATAAGAAAGAGATGCGGTTTACTTCTAACAAGCCTGTCTCAGTTATAATCTCTAGGTTGGAAGAAATTTGCAAGTGTCTTCACTTGAAAGTAAAGAAGAAAGATGGAGGTTTGTTCAAGTTGGAAGGTTCCAAGGAAGGCAGGAAAGGGGCTTTGGGTATTGATGCTGAGATTTTTGAGATTACTCCACTCTTTCATATGGTGGAACTTAAGAAGTCTAATGGGGATACCTTGGAGTTCCAGAAGCTTCTGGAACAGGACATTAGACCAGCACTTAAGGACATTGTTTGGACCTGGCAAGGAGAACAACCACAGCAACTCCAACATGAAGTAGTGCAGGAAGAGCAACAGCCTTCTCATACTGTCCCTGCCCAGTTAGAGGCTGTACCACAGTGA 1359 0.4135 MERKGSVLMQRYELGKLLGQGTFAKVYHARNLVTGMSVAVKVIDKEKILKVGMIDQIKREISVMKLVRHPHVVELYEVMASKTKIYFIMEYAKGGELFDKVAKGKLKVDVARKYFQQLICAVDYCHSRGVSHRDLKPENLLLDENENLKVSDFGLSAIAESKCQDGLLHTTCGTPAYVAPEVINRKGYDGSKADIWSCGVILYVLLAGYLPFQDSNLMEMYRKIGKGEFKFPKWFSPDVRRLLSKILDPNPNTRISMTNIMKNSWFRTGLEKPVIIETENKGLASQDADGAFEAKPSNLNAFDIISFSIGFDLSGLFEDTLHKKEMRFTSNKPVSVIISRLEEICKCLHLKVKKKDGGLFKLEGSKEGRKGALGIDAEIFEITPLFHMVELKKSNGDTLEFQKLLEQDIRPALKDIVWTWQGEQPQQLQHEVVQEEQQPSHTVPAQLEAVPQ 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2843g00015 452 Pfam Protein kinase domain 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00015 452 FunFam Non-specific serine/threonine protein kinase 2 292 - -
Gabi2843g00015 452 CDD STKc_SnRK3 11 265 - -
Gabi2843g00015 452 Pfam NAF domain 296 354 IPR004041 GO:0007165
Gabi2843g00015 452 SUPERFAMILY Protein kinase-like (PK-like) 8 267 IPR011009 -
Gabi2843g00015 452 ProSiteProfiles NAF domain profile. 294 318 IPR018451 GO:0007165
Gabi2843g00015 452 ProSitePatterns Serine/Threonine protein kinases active-site signature. 130 142 IPR008271 GO:0004672|GO:0006468
Gabi2843g00015 452 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 7 414 - -
Gabi2843g00015 452 CDD CIPK_C 300 414 - -
Gabi2843g00015 452 Gene3D Kinase associated domain 1, KA1 298 419 - -
Gabi2843g00015 452 SMART serkin_6 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00015 452 FunFam Non-specific serine/threonine protein kinase 294 418 - -
Gabi2843g00015 452 ProSiteProfiles Protein kinase domain profile. 12 266 IPR000719 GO:0004672|GO:0005524|GO:0006468
Gabi2843g00015 452 Gene3D Transferase(Phosphotransferase) domain 1 4 297 - -
Gabi2843g00015 452 ProSitePatterns Protein kinases ATP-binding region signature. 18 41 IPR017441 GO:0005524
Gabi2843g00015 452 FunFam Non-specific serine/threonine protein kinase 3 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2843g00015 Gabi-Chr2843 221200 225294 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2843g00015 1 426 CBL-interacting serine-threonine protein kinases AT5G58380 65.639 0.0 613
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-CHK1 Gabi2843g00015 Pkinase 4.9e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2843g00015 K07198 - gmx:100811923 734.947