Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2841g00002 ATGGAACAGTCGAAATTGGCTGCAGAATCTGATGCCCTAAAGGATAATCCTTTTAGGCCCAAGCTAAAAAATAGCAATGCACTTGAGTCTTTTGGCAGTCTGAGAAGTAAAAAGATATCAGCTAGATGGGATCCAGTTGAAGCATGTCGGCCTATTATTGATGAAGCACCTGTGTTTTATCCGACTGTTGAAGAGTTTGAAGATACACTCGGTTACATAGCAAAGATACGTCCGCATGCTGAACCCTATGGCATATGTAGGATTGTCCCTCCACCTTGCTGGGTTCCACCTTGCCCTCTTAAGGAGAAGGATCTGTGGGAAAATGCAAAATTTCCCACCCGTATTCAGTATATTGATTTACTTCAAAATAGGGAACCTATGAGGAAAAAAAGTAGGGGAAAAAAACGAAAACGGAGAAAGCACTCCAAAACAGGCACATGCAGGAGTCTTGCCAATTCAGCTTCTGGAGCTAACAATGCTTCTGAATCTGATGAGAAATTTGGATTTCAATCAGGGTTGGACTTCACGCTTAAAGACTTTCAGCAATATGCTAATTTTTTTAAGGAATGCTACTTTGGTTTGAAAGATACCAATGAAGATGGAAAACTTAGTGATAGTAACCACCAAAAGAGAGGGGAGCCCTCTGAGGCGGAAATTGAAGGTGAATACTGGCGAATAATTGAGCAACCAACTGATGAGGTTGAGGTGTATTATGGAGCTGACTTGGAAACTGGAGCACTTGGAAGTGGTTTTCCTAAGACATCATCCTTAACTAAGAGTGATTCAGATCAGTATGCCCTGTCTGGATGGAATCTAAATAACTTCCCGCGACTGCCAGGTTCTGTACTAAGTTTTGAAGGAAGCGACATCTCAGGAGTTCTAGTGCCATGGCTGTATGTTGGCATGTGCTTTTCATCATTTTGCTGGCATGTTGAGGATCATCACCTTTATTCGCTTAATTATCTGCACTGGGGTGACCCAAAAGTATGGTATGGAGTACCTGGATGCCATGCTTCGGTTTTTGAAGATTCAATGAGGAAGAACTTGCCTGATTTATTTGAGGAACAACCAAATCTACTCAATGAACTGGTTACTCAGTTATCTCCTTCAATTCATAAATCTGAGGGAGTTCCTGTGTATCGTACTGTTCAGCATTCTGGGGAATTTGTTATTACCTTTCCAAGGGCATACCACTCTGGCTTCAATTGTGGCTTCAATTGTGCAGAGGCAGTGAATGTGGCTCCTGTTGATTGGTTAATGCATGGCCAGAATGCTGTTGAGCTTTACAGTTTGCAATGCCGTAAGACATCATTGTCACACGACAAGCTGTTATTTGGATCAGCAAAGGAAGCTGTACGAGCCCTTGCACAGCTAGCTCTTTTTGGAAAGGAAACTCCAAAAAATTTGAATTGGAGAAGTGTATGTGGGAAAGAT 1434 0.4212 MEQSKLAAESDALKDNPFRPKLKNSNALESFGSLRSKKISARWDPVEACRPIIDEAPVFYPTVEEFEDTLGYIAKIRPHAEPYGICRIVPPPCWVPPCPLKEKDLWENAKFPTRIQYIDLLQNREPMRKKSRGKKRKRRKHSKTGTCRSLANSASGANNASESDEKFGFQSGLDFTLKDFQQYANFFKECYFGLKDTNEDGKLSDSNHQKRGEPSEAEIEGEYWRIIEQPTDEVEVYYGADLETGALGSGFPKTSSLTKSDSDQYALSGWNLNNFPRLPGSVLSFEGSDISGVLVPWLYVGMCFSSFCWHVEDHHLYSLNYLHWGDPKVWYGVPGCHASVFEDSMRKNLPDLFEEQPNLLNELVTQLSPSIHKSEGVPVYRTVQHSGEFVITFPRAYHSGFNCGFNCAEAVNVAPVDWLMHGQNAVELYSLQCRKTSLSHDKLLFGSAKEAVRALAQLALFGKETPKNLNWRSVCGKD 478
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2841g00002 478 ProSiteProfiles JmjC domain profile. 264 430 IPR003347 -
Gabi2841g00002 478 PANTHER LYSINE-SPECIFIC DEMETHYLASE 51 472 - -
Gabi2841g00002 478 MobiDBLite consensus disorder prediction 146 163 - -
Gabi2841g00002 478 Pfam JmjC domain, hydroxylase 297 413 IPR003347 -
Gabi2841g00002 478 Gene3D Cupin 41 414 - -
Gabi2841g00002 478 MobiDBLite consensus disorder prediction 1 24 - -
Gabi2841g00002 478 SUPERFAMILY Clavaminate synthase-like 265 450 - -
Gabi2841g00002 478 MobiDBLite consensus disorder prediction 126 163 - -
Gabi2841g00002 478 SMART cupin_9 264 430 IPR003347 -
Gabi2841g00002 478 ProSiteProfiles JmjN domain profile. 56 97 IPR003349 -
Gabi2841g00002 478 MobiDBLite consensus disorder prediction 128 145 - -
Gabi2841g00002 478 Pfam jmjN domain 57 90 IPR003349 -
Gabi2841g00002 478 SMART JmjN_1 55 96 IPR003349 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2841g00002 Gabi-Chr2841 34644 40066 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2841g00002 9 478 JUMONJI Transcription Factor Family AT1G30810 65.116 0.0 588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Gabi2841g00002 JmjC 4.4e-46 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2841g00002 K11446 - gmx:100801775 820.076