Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2840g00002 ATGGGTGACTGGACTGATACATCATCTGTGTCTAACATCAACCAGGAGTCTTCTCTAGAAATGCTCCCTCTGCAAACATCGCTATCTCTAGTTTCTTCAGATCCTCGCCTCTCTCCTGATGAACCTAGATCAAACTCTGACAATCTCCGTGAATCTCCCACCAAAAGTGCCAGTTCTCAAGAAACTTGGCCTACAACTGATGCAACTGCAGCAAAAAAGATGGAGAATGGGAAAGCTGAGACTAATTGCCTTGAGCAGTCAGTTATTCGCCATGTTTCTAGTGTGGACAAAATTACTCTTCAGGACATTGCAAGAGAAAGTGTTGATATAATCTGTGAAAAAATACATCGTGTACCTGAGGGATTTCTGGAAGAGCTGAAGAATGGACTTCGAGTTATCCTTGAGCGTGGAAATGTTTCACATTATAGAGAGGAATTTTTTCTTTTGCGGAATCTTGTTCAGAGAAGACTTGATTTAACTGCCAAGACACTGATTAGAGCACATCGTGTGCAGCTTGAAATCCTTGTTGCAATGATTACTGGAATTCAGGGATTTTTGCATCCTAGCACCAGTTTATCACAGACTTCCCTGATTGAGATCTTTGGGTATAAGAGATGCAGAAACATAGCATGTCAAAACCAGCTTCCAGCTGATGATTGTACCTGTGAAATATGCACAAACAGTAATGGTTTCTGCAATCTTTGCATGTCTGTAATCTGCAGCAAGTTTGACTTTGAAGTGAATACATGCCGCTGGATTGGAAGTGATTGGTGTTCTCACTGGACTCACACAGATTGTGCCATAATCCGTGAGCAACTCATTTGCATGGGCCCTTCTTTGGAAAGCGAAGAAGGACCAAGTGAAATGGTTTCTAGGTGTCCAGCATGCAAGAGGACTTCAGAACTGTGGGGTTGGGTTAAAGATGTCTTCCTAAACTGTGCACCATCATGGGATGGAGAGGCCTTAATGAGGGAACTTGATTATGTTAGTAGGATCTTTCATGGTAGTAAAGACCCAAGAGCAAGGAAACTATTTTGGAAGTGTGATGATCTCAGGGAAAAATTGAAAAGTGAAAAAATGGAATCAAAAGCTGCTTCCAGGGCTATATTGATGTTTTTCCAAGAATCTCAAGCAGATGGGAGCATTGGAGAGAAGAAACCTAAATTATCTGGGGAAGATAGACCTTATATGACAGAGTTGAGTGGATACAATTTTGAGACCCCGTTCTTTGACATTGAATACAATGGAGCTGTAAGAACTTCACAATCATGGGAGAAGGAATCTGTTTCAACTGAAGATGGTTATCAATGGAGGACGTATGGTCAAAAAGACATCCTGAATGCCAAATATCCAAGGAACTACTACAGATGCACTCACAGATATGATCAAGGTTGCCTAGCAACAAAACAGGTGCAGAGAATTCAAGAGGATCCTCCACTTCACAGGACAACCTATTATGGAAACCACACTTGTCGTCACGACAGCTCATATAAGCTATTCCGAGGCAAAGAGAAGATAAGTGAGGCAAAATGCTCATGGTCATTATTACCTGACAGTTCTGACAAAAGCACTGATAGAACGACAAATTCATGTTCACACGAGTATTCTGGCCCGTCCTGA 1620 0.4179 MGDWTDTSSVSNINQESSLEMLPLQTSLSLVSSDPRLSPDEPRSNSDNLRESPTKSASSQETWPTTDATAAKKMENGKAETNCLEQSVIRHVSSVDKITLQDIARESVDIICEKIHRVPEGFLEELKNGLRVILERGNVSHYREEFFLLRNLVQRRLDLTAKTLIRAHRVQLEILVAMITGIQGFLHPSTSLSQTSLIEIFGYKRCRNIACQNQLPADDCTCEICTNSNGFCNLCMSVICSKFDFEVNTCRWIGSDWCSHWTHTDCAIIREQLICMGPSLESEEGPSEMVSRCPACKRTSELWGWVKDVFLNCAPSWDGEALMRELDYVSRIFHGSKDPRARKLFWKCDDLREKLKSEKMESKAASRAILMFFQESQADGSIGEKKPKLSGEDRPYMTELSGYNFETPFFDIEYNGAVRTSQSWEKESVSTEDGYQWRTYGQKDILNAKYPRNYYRCTHRYDQGCLATKQVQRIQEDPPLHRTTYYGNHTCRHDSSYKLFRGKEKISEAKCSWSLLPDSSDKSTDRTTNSCSHEYSGPS 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2840g00002 539 CDD PHD_OBE1_like 236 296 IPR047578 -
Gabi2840g00002 539 MobiDBLite consensus disorder prediction 1 34 - -
Gabi2840g00002 539 MobiDBLite consensus disorder prediction 1 66 - -
Gabi2840g00002 539 PANTHER VERNALIZATION-INSENSITIVE PROTEIN 3 40 379 IPR004082 -
Gabi2840g00002 539 Gene3D WRKY domain 416 493 IPR036576 GO:0003700|GO:0006355|GO:0043565
Gabi2840g00002 539 ProSiteProfiles WRKY domain profile. 426 489 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2840g00002 539 Pfam PHD - plant homeodomain finger protein 206 330 IPR032881 -
Gabi2840g00002 539 Pfam WRKY DNA -binding domain 432 492 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2840g00002 539 SMART WRKY_cls 431 493 IPR003657 GO:0003700|GO:0006355|GO:0043565
Gabi2840g00002 539 Coils Coil 348 368 - -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 114 136 IPR004082 -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 171 186 IPR004082 -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 243 263 IPR004082 -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 317 336 IPR004082 -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 197 218 IPR004082 -
Gabi2840g00002 539 PRINTS Arabidopsis thaliana 130.7kDa hypothetical protein signature 156 171 IPR004082 -
Gabi2840g00002 539 MobiDBLite consensus disorder prediction 516 539 - -
Gabi2840g00002 539 MobiDBLite consensus disorder prediction 49 66 - -
Gabi2840g00002 539 SUPERFAMILY WRKY DNA-binding domain 427 493 IPR036576 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2840g00002 Gabi-Chr2840 23474 28983 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2840g00002 427 491 WRKY Transcription Factor Family AT3G56400 61.538 6.73e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Gabi2840g00002 PHD_Oberon 5.1e-34 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2840g00002 - - vum:124846085 595.119