Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2838g00031 ATGGAGTCTGATCATGATCATCATCAACCAATATCAGAAAAACCCCTCGATGGTGATGATCAAGGTGCAAGTCATGTACCATCATCCAGGTCCTACGAGTGCAACTTTTGCAAGAGGGGTTTCTCTAATGCACAAGCACTTGGGGGTCATATGAACATCCATAGGAAAGACAAAGCAAAACTCAAGCAACAATCTTCAAACCAAACTCAACCATCTTTGGAGTCTAAGTCTGGTGAAGAACGCAGCAAACAAAGCTGGAATTGGAATGTGTCTCAACAAGACTATGCCTCCTCCATAGATGAAACTCACATGAGGCAGCTTCCACTCTTTGCTGAATCACCAAATAGCAGTGAAACGCAAAAGCCACAAGGTCAAATTCATGGGGATATTGCTACAGAACGTTCCTCATCTGAGTTAGACCTTGAACTGAGATTAGGGTCTGAGCCACGGGATTTATCTCCGGCTACCGGTACCAGAAAATTCTATTGA 489 0.4376 MESDHDHHQPISEKPLDGDDQGASHVPSSRSYECNFCKRGFSNAQALGGHMNIHRKDKAKLKQQSSNQTQPSLESKSGEERSKQSWNWNVSQQDYASSIDETHMRQLPLFAESPNSSETQKPQGQIHGDIATERSSSELDLELRLGSEPRDLSPATGTRKFY 162
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2838g00031 162 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 1 20 - -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 110 132 - -
Gabi2838g00031 162 SUPERFAMILY beta-beta-alpha zinc fingers 29 59 IPR036236 -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 133 147 - -
Gabi2838g00031 162 Gene3D Classic Zinc Finger 21 94 - -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 110 162 - -
Gabi2838g00031 162 PANTHER OS07G0101800 PROTEIN 10 149 - -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 1 30 - -
Gabi2838g00031 162 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Gabi2838g00031 162 MobiDBLite consensus disorder prediction 48 89 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2838g00031 Gabi-Chr2838 302896 303384 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2838g00031 29 158 C2H2 Transcription Factor Family AT3G53820 34.000 2.77e-17 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Gabi2838g00031 zf-C2H2_6 1.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2838g00031 - - vun:114170729 192.2