Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2838g00020 ATGAATTCTGATCCACAACCCAGAACGGCGTCGTTCTGGTGCTACAGCTGCACCCGTTTCGTTCAACTGTTGGGGCACGACAACATCCTATGCCCCCACTGCGAAAGCGGTTTTGTTGAAGAGATCCACGCTGAGTCTGAACCCTCACACCACCACCGTCTCAGTCCCTTCCCCGATGGCCCCATCTCAACGAGGCAAGGGTTCCGCCGCAGACGCCGCGACGCCGGCAACCGCTCCCCTTTTAACCCCGTCATCGTGCTCCGCGGACCAGGGGACGACGCCGCCGCCGATCAAGACGGATCAAGCACCTTCGAATTGTACTACGACGACGGCGATGGATCTGGCCTCCGTCCTCTGCCGCCGACCATGTCGGAGTTCCTGTTAGGGTCCGGGTTCGATCGGTTGCTTGAGCAGTTTACGCAGATCGAGGTGAATGGTTTTGGACGTCCGGAGAATCCGCCGGCGTCTAAGGCGGCGATCGAGGCGATGCCGACGGTTGAGATCGGTGAGGCACACGTGGGTACAGACGCGCACTGTGCCGTTTGTAAAGAAGCGTTTGAGCTGGGCGCGGAGGCGCGTGAGTTACCCTGCAAGCACGTTTATCATTCGGATTGCATTCTTCCATGGCTTTCGATGCGGAACTCGTGCCCGGTGTGCCGCCACGAATTGCCTTCGGATCTTAACCCTTTGGGAAACAGTGTATCGGGGCAAATCGATGAGGAAGCAATCGGTTTGACGATATGGAGGTTGCCCGGCGGGGGATTCGCCGTTGGAAGATTTTCCGGTGGCCGGAGAGCCGGCGAGAGCCATTTGCCGGTTGTGTACACGGAGATGGATGGTGGGCTCAATACAAACGGTGCTCCCAGAAGATTTTCTAGGACTGTGAGAAGCAATAGGGTTAGGGAAAGTCGTGGATTTGGCAGAGTTGTTCGCAATTTCTTTTCATTCTTTGGAAGATTTGGTTCTAGGTCATCTTCATCTTCGAATTCTGGTTCTGAGCATGTGTCTGTGAGTAGAAGCCGTAGCCTAGTGAGTTCAGTATTCAGTAGAAACTCTCGGAGACGTAGCAGGGCTTCGATCTTGGATTATTGA 1092 0.554 MNSDPQPRTASFWCYSCTRFVQLLGHDNILCPHCESGFVEEIHAESEPSHHHRLSPFPDGPISTRQGFRRRRRDAGNRSPFNPVIVLRGPGDDAAADQDGSSTFELYYDDGDGSGLRPLPPTMSEFLLGSGFDRLLEQFTQIEVNGFGRPENPPASKAAIEAMPTVEIGEAHVGTDAHCAVCKEAFELGAEARELPCKHVYHSDCILPWLSMRNSCPVCRHELPSDLNPLGNSVSGQIDEEAIGLTIWRLPGGGFAVGRFSGGRRAGESHLPVVYTEMDGGLNTNGAPRRFSRTVRSNRVRESRGFGRVVRNFFSFFGRFGSRSSSSSNSGSEHVSVSRSRSLVSSVFSRNSRRRSRASILDY 363
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2838g00020 363 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 54 224 - -
Gabi2838g00020 363 Pfam zinc-ribbon 11 42 IPR039525 GO:0061630
Gabi2838g00020 363 SMART ring_2 179 219 IPR001841 -
Gabi2838g00020 363 Pfam Ring finger domain 178 220 IPR001841 -
Gabi2838g00020 363 CDD RING-H2_RNF126-like 179 220 - -
Gabi2838g00020 363 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 226 IPR013083 -
Gabi2838g00020 363 ProSiteProfiles Zinc finger RING-type profile. 179 220 IPR001841 -
Gabi2838g00020 363 Pfam Protein of unknown function (DUF1117) 243 353 IPR010543 -
Gabi2838g00020 363 SUPERFAMILY RING/U-box 159 228 - -
Gabi2838g00020 363 MobiDBLite consensus disorder prediction 45 99 - -
Gabi2838g00020 363 FunFam E3 ubiquitin-protein ligase RING1-like 141 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2838g00020 Gabi-Chr2838 195389 198088 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2838g00020 118 226 C3H Transcription Factor Family AT5G01980 46.789 3.86e-27 110