Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2838g00019 ATGTCATGTGTTAAGAGTGTTTGCAGGATTGGCAAGGTACGCGAGGTGAATGCTTTTCCTTTTCCTGAACAGGGACTTAGACTTCAGCTTGCACTTCTTGACCGTGAATTGGATGAGCTAGATTATGACACTTTGAGAGCTCTGGACTCTGATACTGCTTCTAGCACTTGCTCAATGACCGAGGAAGAGATAAATTCCTTGCCTATTCACAAATATAAAGTTCCAGTCCCAACAATAGATGACTCAACCGGGTTGGCATCATCTTCGGGTGCAGCTGAGATTAAACAAGACCCAGGAGGAACAGAGGGAAGTATCAAAGGTCCAGAAGATGAGCTGACATGTACTACATGTTTGGACCAAGTTAAGTGGGGGGTGCTTGTGCGTACCCTGCCATGCTTGCATCAGTTTCATGCCAACTGCATCGATCCATGGCTCAGGCAACAAGGAGCATGTCCTGTGTGCAAATTTAGGATGGGTTTGGGAAGGCGGGGAAACGGTGAGAGCGAGTCCCATGGTTCAGATATTGATTAA 531 0.467 MSCVKSVCRIGKVREVNAFPFPEQGLRLQLALLDRELDELDYDTLRALDSDTASSTCSMTEEEINSLPIHKYKVPVPTIDDSTGLASSSGAAEIKQDPGGTEGSIKGPEDELTCTTCLDQVKWGVLVRTLPCLHQFHANCIDPWLRQQGACPVCKFRMGLGRRGNGESESHGSDID 176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2838g00019 176 Pfam Ring finger domain 113 155 IPR001841 -
Gabi2838g00019 176 ProSiteProfiles Zinc finger RING-type profile. 114 155 IPR001841 -
Gabi2838g00019 176 PANTHER TARGET OF ERK KINASE MPK-1 23 159 - -
Gabi2838g00019 176 SUPERFAMILY RING/U-box 109 159 - -
Gabi2838g00019 176 CDD RING-H2_PA-TM-RING 113 155 - -
Gabi2838g00019 176 MobiDBLite consensus disorder prediction 83 107 - -
Gabi2838g00019 176 SMART ring_2 114 154 IPR001841 -
Gabi2838g00019 176 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 92 160 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2838g00019 Gabi-Chr2838 190224 193106 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2838g00019 24 175 C3H Transcription Factor Family AT3G55530 62.745 7.87e-57 178
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2838g00019 K16283 - gmx:100805406 233.032