Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2838g00006 ATGGATCCAAACTTTCAGGGAGCTATTGATTTCAAAAACAGTTACCAGTTTGGTGAAAACAGCAACACAATCGTGTGGGATCAAAATCAATACGAAACCGATTGGGATGTTAACAATGGAAGCCTTGTTGATCAGCCTTATGCGGATTCACTTGGTTTTACTCTGCATACAAACCCTGTAGAAGGTGAAGGTGCCTCTACAGATCCTTCACTAGAAGACAATGACTTCTCAGAAACCGTCGAATTCATAAGCCAAATTCTGATGGAAGAGAACGTTGAACAGAGGCCGTTTTATGACCCTCTGAGCTTGCTAGTCACTGAGAAATCATTTTATGATGCACTCACTAACAACATACCTCTGTCCCCTAATCAACACCACCGCGATATTCTGAGTCCTGACGGTGGAGCCACCAGCAGCAGCAGCAACAGCAGCGGCGGTGCTAACAACTTTTTACATAACAATTCTCGTGAGTTGAAGTCCCCTTCTCCTGATACCCCTCTTTCTATTTCTGGTTATCATGCTTTTCAGTTTAACTCCCACGCCATTTCTCAACCTGCTTCTTCTAGTGTTAGTGTTAGTGATGGACTGTTAGATTTGGATTCTTCTATTTCCAAAATGTTGGTACAAAATGTTTTCAGTGATGCAGATTCTGTCTCCCAGTTTAGGAAAGGGTTAGAGGAAGCTAGTAAGTTTCTTCCTCTAGGACCTCAGCTTGTAACTGGTCTTGATTCAATGGGAGAATCATTCAATGTAGTTGGGGTGAATTCGGTTGGGTTGAAGGGTAGAAAGAATCATGAGCTCGAAGGACGTGATACCAGAGAAGAAGGGAGAAGTAGGAAGCAATCAGCAGTTGATGTTGTTGATGAGTGTGACTTATCAGATATGTTTGATCGAATGTTGCTTAGTGTGGAGAATGTGCCACTGTTTCAGAATGAAGCAGTGAAAGCTGAAAAGGCGAGTGAAAATTCACCTTCATCTAATGGAGGGAAGGCTTGTCCTAAGAAACAAGAAAAGAAGAAGGAAACCGTTGATTTGAGTAGTCTTCTGCTTTCATGTGCACAAGCTGTGTATGTCAATGATAATAGGAATGCCAATGAACTACTAAAGAAGATAAGGCAACATTCTTCTCCCTTTGGAGATGCATCGCAAAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGACTCGCTTGGTTGGCAATGCTACAGGTTCACAAGGATTTTTTAACTCTCTGAGCTTCAAGAAGAGCACTGCTACTGAGTTTTTGAAAGCTTACCTTGTTTTTATGTCTGCCTGCCCTCTCAAGCAGTTTGTATATTTGTTTGCAAATAAAATGATTATGAAAGCAGCTGAAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCAACATGGTTTCCAGTGGCCAACACTTATTAAGTTTTTATCAGATAGAGATGGTGGACCTCCCAAGCTAAAGATCACTGGCATAGAGTGGCCCCAACCTGGCTTTCGTCCCACAGAAAGAAATCAGCAGACTGGTTGTCGTCTGGCTAACTATTGCAAGCGTTTCAACGTTCCCTTTGAGTACAATGCCTTAGCATCACGGAACTGGGAAACCATTCAAGTACAAGACCTTAAAATTGAGAGCGACGAGCTGGTTGCTGTGAATTGTGCGATGAGGTTTATGAATTTGCCGGATGAGACTATTGAGGTCAACTGTCCTAGAACTGCAGTTCTGCAGTTGATCAGGAAGATAAATCCGGATATTTTTGTTCAGTGCATCGTTCATGGATCTTATAATGCCCCTTTCTTTGACACACGGTTCAAGGAGGCGCTGTTCCATTTTTCTACTATATTTGATATGTGTGACACTGTCCTATCCCGTGATAACCAAAAAAGGATGATGATTGAGAGAGAGCTTTTTGGTCGACAAGCTATCAATGTTATAGCATGTGAAGGTTTCGAGAGACTTGAGAGGCCTGAGACATACAAACAGTGGGAAGTTAGGAATACGAGGGCTGGTTTCAAGCATCTTCCACTGAATGAGGAATTAATGGCCAAATTTAGGACCAAGTTCAAGGAATGGTACCATAGAGATTTTGTATTTGATGTAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCATGCACCTGTTGGGTGCCGGCATAA 2169 0.4232 MDPNFQGAIDFKNSYQFGENSNTIVWDQNQYETDWDVNNGSLVDQPYADSLGFTLHTNPVEGEGASTDPSLEDNDFSETVEFISQILMEENVEQRPFYDPLSLLVTEKSFYDALTNNIPLSPNQHHRDILSPDGGATSSSSNSSGGANNFLHNNSRELKSPSPDTPLSISGYHAFQFNSHAISQPASSSVSVSDGLLDLDSSISKMLVQNVFSDADSVSQFRKGLEEASKFLPLGPQLVTGLDSMGESFNVVGVNSVGLKGRKNHELEGRDTREEGRSRKQSAVDVVDECDLSDMFDRMLLSVENVPLFQNEAVKAEKASENSPSSNGGKACPKKQEKKKETVDLSSLLLSCAQAVYVNDNRNANELLKKIRQHSSPFGDASQRLAHYFANGLETRLVGNATGSQGFFNSLSFKKSTATEFLKAYLVFMSACPLKQFVYLFANKMIMKAAEKAETLHIIDFGIQHGFQWPTLIKFLSDRDGGPPKLKITGIEWPQPGFRPTERNQQTGCRLANYCKRFNVPFEYNALASRNWETIQVQDLKIESDELVAVNCAMRFMNLPDETIEVNCPRTAVLQLIRKINPDIFVQCIVHGSYNAPFFDTRFKEALFHFSTIFDMCDTVLSRDNQKRMMIERELFGRQAINVIACEGFERLERPETYKQWEVRNTRAGFKHLPLNEELMAKFRTKFKEWYHRDFVFDVDNNWMLQGWKGRILYACTCWVPA 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2838g00006 722 ProSiteProfiles GRAS family profile. 336 720 IPR005202 -
Gabi2838g00006 722 MobiDBLite consensus disorder prediction 121 165 - -
Gabi2838g00006 722 MobiDBLite consensus disorder prediction 316 330 - -
Gabi2838g00006 722 Pfam GRAS domain family 346 719 IPR005202 -
Gabi2838g00006 722 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 304 715 IPR005202 -
Gabi2838g00006 722 MobiDBLite consensus disorder prediction 316 337 - -
Gabi2838g00006 722 MobiDBLite consensus disorder prediction 263 282 - -
Gabi2838g00006 722 MobiDBLite consensus disorder prediction 133 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2838g00006 Gabi-Chr2838 56596 59570 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2838g00006 79 722 GRAS Transcription Factor Family AT1G07530 46.066 0.0 572
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2838g00006 GRAS 4.6e-113 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2838g00006 - - gmx:100795855 833.943