Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2838g00003 ATGGATCCAAACTTTCAGGGAGCTATTGATTTCATAAACAGTTACCAGTTTGGTGAAGACAGCAACCAAATCGTGTGGGATCAAAATCAATACGAAACCGATTGGGATGTTAACGGAATCCTTCTTGATCAGCCTTATGCGGATTCACTTGGTTTTGCTATGCATACAAACCCTGTAGAAGGTGAAGTTGCCTCTGCAGATCCTTCACTAGAAGACACTGAGTTCTCAGAAACCGTGACATTCATAAGCCAAGTTCTGATGGAAGAGAACGTTGAACAGAGGCCGTTTTATGACCCTCTGAGCTTGCAAGTCACTGAGAAATCATTCTATGATGCTCTCACTGAAAACATACCTCTTTCCCCTAATCAACACCCCCTCGATATTCTGAGTCCCGACGGTGGAGCCACCACCACCAGCAGCAACAGCAACAGCAGCGGCGGCGCTAGCAACTCTTTAGATGACAATTCTCGTGAGTTGAAGCCCCCTTCTCCTGATACCCCTCTTTCTGTTTCTGGTGATCATGCTTTTCAGTTTAACTCCCATGCCATTTCTCAACATCTTTCCACTAGTGTTACTGTTAGTGATGGACTGTTAGATTTGGGTTATTCTATTACCAAAATGTTAGCACAAAATATTTTCAGTGACGCAGATTCTGTCTCCCAGTTTAGGAGAGGGTTAGAGGAAGCTAGTAAGTTTCTTCCTCCAGGACCTCAGCTTGTAACTGGTCTTGATTCAAAGGGAGAATCATTCAGCATGGTTGGGGCGAATTCGGTTGCGTTGCAGGGTAGAAAGAATCATGAGCGCGAAGGAGGTGACACCAGTGAAGAAGGGAGAAGTAGCAAGCAATCAGCAGTTGGTGTGGTTGATGAGAGTGACTTATCAGATATGTTTGATCGAGTGTTGCTTAGTGTGGAGAAACCACTCTGTAATGAACGTGATTGCTTGCAGAATGGAACAGTGAAAGCCGAGAAGGCAGGTGAAAATTCACCTTCATCTAATGGACGGAAGGCTCGTCCTAAAAAACAAGGAAAGAAGAAGGAAACCGTGGATTTGAGGAGTCTTCTGCTTTTATGTGCACAAGCTGTGTATGTCAATGACAATAGGACTGCTAATGAATTACTAAAGCAGATAAGGCAACATTCTTCCCCCGTTGGAGATGCATCTCAAAGGTTGGCTCATTACTTTGCCAATGGCCTTGAGACACGCTTGCTTGGCGATGCTACAGGTTCACAAGGATTTCTTAACTCTCTGAGCTTCAAGAGGATCACTGCTGCTGAGTTTTTGAAAGCTTACCAAGTTTTTATATCTGCCTGCCCTTTCAAGAGGTTTGCATATTTCTTTGCAAATAAAATGATTATGAAAGCAGCTGAAAAGGCAGAAACCCTTCATATTATTGATTTTGGTATCCAATATGGTTTCCAGTGGCCAATACTTATTAAGTTTTTATCAGATAGAGATGGTGGACCTCCCAAGCTAAAGATCACTGGCATAGAGTGGCCCCAACCTGGCTTTCGTCCCACAGAAAGAAATGAGCAGACTGGTTGTCGTCTGGCTAACTATTGCAAGCGTTTCAACGTTCCCTTTGAGTACAATGCCTTAGCATCACGTGACTGGGAAACCATTCAAGTACAAGACCTTAAAATTGAGAGCAACGAGCTAGTTGCTGTGAATTGTATGATGAGGTTTAAGAATTTGATGGATGAGACTTTTGAAGTCAACAGTCCTAGAAATGCAGTTCTGCAGTTGATTAGGAAGATAAATCCGGATATTTTTGTTCAGTGCATCGTTAATGGATCTTATAATGCCCCTTTCTTTGCCACACGGTTCAGGGAGGCGCTGTTCCATTTTTCTGCTATGTTTGATATGTGTGACACTGTCATATCCCGTGAAAATGAAAAGAGGATGATGCTTGAGCGAGAACTTATAGGTCGGCAGGCTATCAATGCTATAGCATGTGAAGGTTTCGAGAGACTTGAGAGGCCTGAGACATACAAACAGTGGGAAGTTAGGAATACGAGGGCTGGTTTCAAGCATCTTCCACTGAATGAGGAATTAATGGCTAAATTTAGGACCAAGTTCAAGGAATGGTACCATAGAGATTTTGTATTTGATGTAGACAACAACTGGATGCTTCAAGGTTGGAAGGGCCGCATTTTGTATGCATCCACCTGTTGGGTGCCTGTATAA 2187 0.4326 MDPNFQGAIDFINSYQFGEDSNQIVWDQNQYETDWDVNGILLDQPYADSLGFAMHTNPVEGEVASADPSLEDTEFSETVTFISQVLMEENVEQRPFYDPLSLQVTEKSFYDALTENIPLSPNQHPLDILSPDGGATTTSSNSNSSGGASNSLDDNSRELKPPSPDTPLSVSGDHAFQFNSHAISQHLSTSVTVSDGLLDLGYSITKMLAQNIFSDADSVSQFRRGLEEASKFLPPGPQLVTGLDSKGESFSMVGANSVALQGRKNHEREGGDTSEEGRSSKQSAVGVVDESDLSDMFDRVLLSVEKPLCNERDCLQNGTVKAEKAGENSPSSNGRKARPKKQGKKKETVDLRSLLLLCAQAVYVNDNRTANELLKQIRQHSSPVGDASQRLAHYFANGLETRLLGDATGSQGFLNSLSFKRITAAEFLKAYQVFISACPFKRFAYFFANKMIMKAAEKAETLHIIDFGIQYGFQWPILIKFLSDRDGGPPKLKITGIEWPQPGFRPTERNEQTGCRLANYCKRFNVPFEYNALASRDWETIQVQDLKIESNELVAVNCMMRFKNLMDETFEVNSPRNAVLQLIRKINPDIFVQCIVNGSYNAPFFATRFREALFHFSAMFDMCDTVISRENEKRMMLERELIGRQAINAIACEGFERLERPETYKQWEVRNTRAGFKHLPLNEELMAKFRTKFKEWYHRDFVFDVDNNWMLQGWKGRILYASTCWVPV 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 132 157 - -
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 321 346 - -
Gabi2838g00003 728 ProSiteProfiles GRAS family profile. 342 726 IPR005202 -
Gabi2838g00003 728 Pfam GRAS domain family 351 725 IPR005202 -
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 120 173 - -
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 262 276 - -
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 258 288 - -
Gabi2838g00003 728 MobiDBLite consensus disorder prediction 322 336 - -
Gabi2838g00003 728 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 294 721 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2838g00003 Gabi-Chr2838 19712 22875 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2838g00003 78 727 GRAS Transcription Factor Family AT1G07530 48.420 0.0 608
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Gabi2838g00003 GRAS 1.3e-112 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2838g00003 - - lja:Lj0g3v0300259.1 892.493