Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00053 ATGGCATGCAGGGGGAACATCAAATCATGCAAAAAGGGAAAGACAGGAAGCAATGTTATCAAAAAAAAAAAAAAAAAGACAGGAAGCAGGAGAAAGGGAGGCACAAGAAGAAAATCAAATCGAATGGACCCTGACGTTGCTCGTTGGTCGTTGGAGTTCCTTCTTCGGAACACAGCCACAGACACTACCCTAATCAAGAAAATCATTTCTAGAATCCCAGTTTCAGACACCGATTCTCGCTTCAAGAAAACCCTTCTCCTGAGAACCCTTCAAGACAACTTGTCCACAGCCTCTATTTCAGAATCCATGCTTGAAACTCTCGAGCTCCTCGAGGAACTCTATCGTTGCGACGGCTCTCCAATCAACGCTGCCATGAACGCCGCCTATTGCGCGGTTGCCGTGGAATGTACCCTCAAGTACTTGGAACTGGACCCAGCCTACCTCAACGCTGTCGAGAGGATATGGCGGGGTAGGGTTCGTTACATGGAGGCATCGGCCTCAGGTGACGGAAGCCTTTTGTTCTCAGAGGAGTTGAAGAGGTGGAGAAGTGAGATTGAGGCTTCGCTATTGGACTCGGAAGTGATGGAGAGGTTGGGCAGCATGAATACCAGAAGAGACGCCATTCACAAGCTTAAGGTTTTTTTGGGCGAAGCATGGGCAAATATGGGTCCTCCTTTTCTTGAGTTAGCAACGTGTTTGTGTTTGCCCCCAGAGCACAGATTAACAGGGAATTTGAGTTGCCAGAGGACTGGTGCTGCTTCTATTGACACTCAGACGACCGAGTTTGATGGACATCAAGAGAAAGTGTCTCCAATGGAAATTCAGAAGGACAGTAAGCTGCTTAAAGGCAAGTGTACTGCTACTGGTGGTGCTGAGGAAGTGGATCCATCAACTAGTATCAAAACTGTCTCTATGCTGAGCCATGAAGTCCAAAAGCATGGGAAATCCCATGAATGTAGTCCTTTGGAGTTGCATATGTCTGACATTGTAAGATCTGAATTGGCAATGAAAGACATGAATAAGGAGCCACCTATTGAAAATCAGAATAGAGATGCAGATGTACCTGATCCACATGCTTGCCAGAGTATTAATGAAAGAGATGCTAAGCTTAATGAGACCACCTCTGTCTATCGGAGTGATGTTGATCACCCAAGCTTGATGGAACGAAATAGTACGGCTCGTGTTTATGAGTGGGATGATTCGATAGATGGCATGCAGGGGGGAACATCAAATCATGCAAGTAGATTTAATTTGCCTAGCCCAAAGAAGAAGAATTTTTCTCCATTGAAGAAGTATGAACCAGCAAACATTACAAAAAGGAGAAAACAAAAAAAGTGGAGTCAATTGGAAGAGGAGACTCTAAGGACTGCGGTAAACAATTTTGGCAGGGGAAACTGGAAATTAATCTTAAATTCTCACAGAGATATATTTGAAGAGAGAACTGAGGTTGATTTGAAGGACAAGTGGAGAAACATGACACGTTATGGAGGCAAATGA 1497 0.4462 MACRGNIKSCKKGKTGSNVIKKKKKKTGSRRKGGTRRKSNRMDPDVARWSLEFLLRNTATDTTLIKKIISRIPVSDTDSRFKKTLLLRTLQDNLSTASISESMLETLELLEELYRCDGSPINAAMNAAYCAVAVECTLKYLELDPAYLNAVERIWRGRVRYMEASASGDGSLLFSEELKRWRSEIEASLLDSEVMERLGSMNTRRDAIHKLKVFLGEAWANMGPPFLELATCLCLPPEHRLTGNLSCQRTGAASIDTQTTEFDGHQEKVSPMEIQKDSKLLKGKCTATGGAEEVDPSTSIKTVSMLSHEVQKHGKSHECSPLELHMSDIVRSELAMKDMNKEPPIENQNRDADVPDPHACQSINERDAKLNETTSVYRSDVDHPSLMERNSTARVYEWDDSIDGMQGGTSNHASRFNLPSPKKKNFSPLKKYEPANITKRRKQKKWSQLEEETLRTAVNNFGRGNWKLILNSHRDIFEERTEVDLKDKWRNMTRYGGK 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00053 498 MobiDBLite consensus disorder prediction 408 431 - -
Gabi2834g00053 498 MobiDBLite consensus disorder prediction 1 42 - -
Gabi2834g00053 498 Gene3D - 435 496 - -
Gabi2834g00053 498 Pfam Myb-like DNA-binding domain 444 492 IPR001005 -
Gabi2834g00053 498 CDD SANT_TRF 444 494 - -
Gabi2834g00053 498 SMART sant 442 495 IPR001005 -
Gabi2834g00053 498 SUPERFAMILY Homeodomain-like 445 496 IPR009057 -
Gabi2834g00053 498 MobiDBLite consensus disorder prediction 15 37 - -
Gabi2834g00053 498 PANTHER MYB TRANSCRIPTION FACTOR 42 495 - -
Gabi2834g00053 498 ProSiteProfiles Myb-like domain profile. 438 493 IPR001005 -
Gabi2834g00053 498 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 438 497 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00053 Gabi-Chr2834 382889 388883 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00053 48 492 Single Myb Histone (SMH) Gene Family AT1G15720 28.070 4.95e-30 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Gabi2834g00053 Myb_DNA-binding 1.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2834g00053 - K11111 psat:127081272 454.907