Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Gabi2834g00050 ATGTCAAACCCTAGGGTTTTTTTCGATATGACCATTGGAGGACAACCCGCCGGTCGCATAGTCATGGAGCTTTACGCCGACACCACCCCTGTTACCGCCGAGAACTTCCGCGCCCTTTGCACAGGCGAGAAGGGAGTTGGTCGCAGCGGCAAGCCTCTCCATTTCAAGGGTTCTGCCTTTCACCGCGTCATCCCCGACTTCATGTGTCAGGGAGGTGACTTCACCGCCGGGAACGGCACCGGCGGCGAGTCAATCTACGGCGAGAAGTTCGCTGACGAGAACTTCACCAGGAAGCACACCGGTCCAGGTATCTTGTCGATGGCCAATGCGGGTCCCAACACCAACGGATCTCAATTCTTCATCTGCACGGCGCAGACGGCGTGGCTGGACGGGAAGCACGTGGTTTTCGGTCAGGTTGTGGAGGGCATGGGTGTGATGGCAGAGAATGGCAAAGGTTTGATACTGGCGGTGGCTTCAAGTGCATTCATAGGGGCAAGCTTCATCTTGAAGAAGAAGGGTCTTAAGCGAGCTGCTGCTCACGGCACTCGTGCAGGAGTTGGCGGTTATACTTATCTATTAGAGCCACTTTGGTGGGCTGGCATGGTAACAATGATTATTGGGGAGATTGCAAACTTTGTGGCTTATATCTATGCTCCTGCAGTTCTGGTTACCCCCCTTGGTGCACTAAGTATTATTGTCAGTACTGTTTTGGCTCACTTCTTGCTGAAGGAAAAGCTTCAGAAGATGGGGATTTTGGGATGTGTGTCCTGCATTGTGGGTTCAGTTGTTATAGTCATCCATGCACCTCAAGAGCACAGTCCAAGTTCTGTGCAAGAAATATGGGATCTGGCCACTCAACCAGTATTTCTAGTTTATGTGGCGGCAACAGTTTCAGTAGTTTTAGCTTTGATTTTGCATTTTGAACCTCACTATGGACAGACGAATATGCTAATCTACTTGGGAATTTGTTCATTAATGGGCTCACTTACGGTAATGAGCATAAAAGCCATTGGAATTGCAATCAAGCTTACTGTAGAGGGAATTAGTCAAATAGCTTGTCCTCAAACTTGGTTCTTTTTTACAGTGGCTGCCATATGTGTCATTACACAGTTGAATTACCTGAACAAGGCACTGGATACATTTAACGCAGCAGTTGTTGCTCCTGTATATTATGTCATGTTCACAATTCTGACTATCATTGCTAGTGTGATAATGTTTAAGGATTGGTCTGGTCAGAATGTGAGCAGCATAGCCTCTGAGATATGTGGATTCCTAATTGTTCTTTCAGGAACAATCATATTGCATGTGACAAGGGAACAAGAACAATCTAACATGCAAGGGTCCTTAACATGGTACATTGGCGAGGATTTGATGAAGGGCATTGAGGATGAACATCTGATCCTTATACATGGTTCAGATTATGTTGAACACTGA 1434 0.47 MSNPRVFFDMTIGGQPAGRIVMELYADTTPVTAENFRALCTGEKGVGRSGKPLHFKGSAFHRVIPDFMCQGGDFTAGNGTGGESIYGEKFADENFTRKHTGPGILSMANAGPNTNGSQFFICTAQTAWLDGKHVVFGQVVEGMGVMAENGKGLILAVASSAFIGASFILKKKGLKRAAAHGTRAGVGGYTYLLEPLWWAGMVTMIIGEIANFVAYIYAPAVLVTPLGALSIIVSTVLAHFLLKEKLQKMGILGCVSCIVGSVVIVIHAPQEHSPSSVQEIWDLATQPVFLVYVAATVSVVLALILHFEPHYGQTNMLIYLGICSLMGSLTVMSIKAIGIAIKLTVEGISQIACPQTWFFFTVAAICVITQLNYLNKALDTFNAAVVAPVYYVMFTILTIIASVIMFKDWSGQNVSSIASEICGFLIVLSGTIILHVTREQEQSNMQGSLTWYIGEDLMKGIEDEHLILIHGSDYVEH 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Gabi2834g00050 477 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 24 39 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 103 118 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 118 130 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 60 72 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 131 146 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 146 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 7 146 IPR002130 GO:0000413|GO:0003755
Gabi2834g00050 477 CDD cyclophilin_ABH_like 4 146 - -
Gabi2834g00050 477 Gene3D - 1 152 IPR029000 -
Gabi2834g00050 477 Pfam Magnesium transporter NIPA 149 439 IPR008521 GO:0015095|GO:0015693|GO:0016020
Gabi2834g00050 477 SUPERFAMILY Multidrug resistance efflux transporter EmrE 195 267 - -
Gabi2834g00050 477 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 55 72 IPR020892 GO:0003755|GO:0006457
Gabi2834g00050 477 PANTHER UNCHARACTERIZED 151 443 IPR008521 GO:0015095|GO:0015693|GO:0016020
Gabi2834g00050 477 SUPERFAMILY Cyclophilin-like 2 146 IPR029000 -
Gabi2834g00050 477 FunFam Peptidyl-prolyl cis-trans isomerase 1 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Gabi2834g00050 Gabi-Chr2834 368620 374594 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Gabi2834g00050 18 147 U-box Gene Family AT5G67530 48.092 8.90e-27 111
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Gabi2834g00050 K22733 - gmx:100817349 555.444